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Genome Information for Mus musculus
We conducted a high-throughput sequencing study to measure whole brain miRNA expression levels in alcohol naïve animals in the LXS panel of recombinant inbred (RI) mouse strains.
More...We conducted a high-throughput sequencing study to measure whole brain miRNA expression levels in alcohol naïve animals in the LXS panel of recombinant inbred (RI) mouse strains. We then combined the sequencing data with genotype data, microarray gene expression data, and data on alcohol-related behavioral phenotypes such as 'Drinking in the dark', 'Sleep time', and 'Low dose activation' from the same RI panel.
This dataset includes small RNA NGS sequencing data from 59 strains from the Inbred Long Sleep (ILS) and Inbred Short Sleep (ISS) Recombinant inbred mouse whole brain RNA samples. 175 mice (2-3 from each strain) were untreated (naive). The naive samples were provided by Boris Tabakoff, University of Colorado Anschutz Medical Campus. All expression data generation and analysis were conducted by the Kechris Group, University of Colorado Anschutz Medical Campus. Less...
| Accession | PRJNA517695 |
| Data Type | Raw sequence reads, Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Mus musculus[Taxonomy ID: 10090] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus |
| Publications | - Russell PH et al., "miR-MaGiC improves quantification accuracy for small RNA-seq.", BMC Res Notes, 2018 May 15;11(1):296
- Rudra P et al., "Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouse.", BMC Genomics, 2018 Aug 29;19(1):639
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| Submission | Registration date: 29-Jan-2019
University of Colorado Denver Anschutz Medical Campus |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
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| Publications |
| PubMed | 2 |
| PMC | 2 |
No public data is linked to this project. Any recently released data that cites this project will be linked to it within a few days.