This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA517606; GEO: GSE125641 |
| Type | Umbrella project |
| Publications | Khoury A et al., "Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.", Nat Commun, 2020 Jan 7;11(1):54 |
| Submission | Registration date: 25-Jan-2019
Garvan Institute |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 26 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 26 |
| GEO DataSets | 4 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 750638 |
| Data volume, Processed Mbytes | 15 |
| Data volume, Supplementary Mbytes | 930 |
| Parameter | Value |
|---|
| Data volume, Gbases | 149 |
| Data volume, Mbytes | 66996 |
Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA518745 | Homo sapiens | ChIP-seq for CTCF, H3K4me3 and H3K27ac following CTCF RNAi in LNCaP cells and IMR90 cells (Garvan Institute) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA518744 | Homo sapiens | Hi-C following CTCF RNAi in LNCaP cells to determine changes to topological domains (Garvan Institute) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA516399 | Homo sapiens | Expression data from CTCF RNAi experiments in LNCaP cell line (Garvan Institute) |
|