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Accession: PRJNA515828 ID: 515828

RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 that is required for tomato fruit ripening (tomato)

See Genome Information for Solanum lycopersicum
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For exploring whether mRNA m6A modification participates in the regulation of tomato fruit ripening, we performed m6A-seq in three tomato fruit samples, including wild-type (WT) at 39 days post-anthesis (DPA) and 42 DPA, and Cnr mutant at 42 DPA, with three biological replicates. More...
AccessionPRJNA515828; GEO: GSE125306
Data TypeEpigenomics
ScopeMultiisolate
OrganismSolanum lycopersicum[Taxonomy ID: 4081]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon; Solanum lycopersicum
PublicationsZhou L et al., "RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening.", Genome Biol, 2019 Aug 6;20(1):156
SubmissionRegistration date: 18-Jan-2019
Key Laboratory of Plant Resources, Institute of botany, Chinese Academy of Sciences
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments18
Publications
PubMed1
PMC1
Other datasets
BioSample18
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes8
SRA Data Details
ParameterValue
Data volume, Gbases133
Data volume, Mbytes51652

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