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Accession: PRJNA515531 ID: 515531

Digital gene expression (DGE) based transcript profiling of CDK inhibitors (human)

See Genome Information for Homo sapiens
We compare differences in gene expression induced after 6 hours of exposure to one of three CDK4/6 inhibitors or a pan-CDK inhibitor Overall design: mRNA levels for 7 breast cancer cell lines or PDX models treated with one of three CDK4/6 inhibitors (abemaciclib, palbociclib, or ribociclib) at 4 concentrations (0.1, 0.3, 1, 3 um) or the pan-CDK inhibitor alvocidib at 2 concentrations (0.1, 1 um) in triplicate.
AccessionPRJNA515531; GEO: GSE125215
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsHafner M et al., "Multiomics Profiling Establishes the Polypharmacology of FDA-Approved CDK4/6 Inhibitors and the Potential for Differential Clinical Activity.", Cell Chem Biol, 2019 Aug 15;26(8):1067-1080.e8
SubmissionRegistration date: 16-Jan-2019
Harvard Medical School
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments335
Publications
PubMed1
PMC1
Other datasets
BioSample335
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases14
Data volume, Mbytes18626

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