ID 515478 - BioProject

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Accession: PRJNA515478 ID: 515478

Whole genome DNA similarity of Plasmodiophora brassicae: New Canadian pathotypes may not be so new.

Whole genome DNA similarity of Plasmodiophora brassicae collections from Canada, China and the USA.

Accession	PRJNA515478
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Sedaghatkish A et al., "Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada.", BMC Genomics, 2019 Oct 16;20(1):744
Submission	Registration date: 16-Jan-2019 University of Guelph
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	43
Publications
PubMed	1
PMC	1
Other datasets
BioSample	43
Assembly	43

Assembly details:

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Assembly level

Number of Assemblies

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Total

43
43

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_009727045.1	SGFC00000000	SAMN10755726	P.b-1	Plasmodiophora brassicae
GCA_009727035.1	SGFB00000000	SAMN10755727	P.b-2	Plasmodiophora brassicae
GCA_009727025.1	SGFA00000000	SAMN10755728	P.b-3	Plasmodiophora brassicae
GCA_009726945.1	SGEX00000000	SAMN10755731	P.b-6	Plasmodiophora brassicae
GCA_009726955.1	SGEZ00000000	SAMN10755729	P.b-4	Plasmodiophora brassicae
GCA_009726965.1	SGEY00000000	SAMN10755730	P.b-5	Plasmodiophora brassicae
GCA_009726935.1	SGEW00000000	SAMN10755732	P.b-7	Plasmodiophora brassicae
GCA_009726265.1	SGDQ00000000	SAMN10755764	P.b-39	Plasmodiophora brassicae
GCA_009726255.1	SGDO00000000	SAMN10755766	P.b-41	Plasmodiophora brassicae
GCA_009726245.1	SGDM00000000	SAMN10755768	P.b-43	Plasmodiophora brassicae
GCA_009726225.1	SGDN00000000	SAMN10755767	P.b-42	Plasmodiophora brassicae
GCA_009726235.1	SGDP00000000	SAMN10755765	P.b-40	Plasmodiophora brassicae
GCA_009726925.1	SGEV00000000	SAMN10755733	P.b-8	Plasmodiophora brassicae
GCA_009726865.1	SGET00000000	SAMN10755735	P.b-10	Plasmodiophora brassicae
GCA_009726855.1	SGEU00000000	SAMN10755734	P.b-9	Plasmodiophora brassicae
GCA_009726845.1	SGEQ00000000	SAMN10755738	P.b-13	Plasmodiophora brassicae
GCA_009726835.1	SGER00000000	SAMN10755737	P.b-12	Plasmodiophora brassicae
GCA_009726825.1	SGES00000000	SAMN10755736	P.b-11	Plasmodiophora brassicae
GCA_009726765.1	SGEP00000000	SAMN10755739	P.b-14	Plasmodiophora brassicae
GCA_009726725.1	SGEL00000000	SAMN10755743	P.b-18	Plasmodiophora brassicae
GCA_009726735.1	SGEN00000000	SAMN10755741	P.b-16	Plasmodiophora brassicae
GCA_009726755.1	SGEO00000000	SAMN10755740	P.b-15	Plasmodiophora brassicae
GCA_009726745.1	SGEM00000000	SAMN10755742	P.b-17	Plasmodiophora brassicae
GCA_009726665.1	SGEK00000000	SAMN10755744	P.b-19	Plasmodiophora brassicae
GCA_009726655.1	SGEJ00000000	SAMN10755745	P.b-20	Plasmodiophora brassicae
GCA_009726645.1	SGEI00000000	SAMN10755746	P.b-21	Plasmodiophora brassicae
GCA_009726625.1	SGEG00000000	SAMN10755748	P.b-23	Plasmodiophora brassicae
GCA_009726635.1	SGEH00000000	SAMN10755747	P.b-22	Plasmodiophora brassicae
GCA_009726565.1	SGEE00000000	SAMN10755750	P.b-25	Plasmodiophora brassicae
GCA_009726545.1	SGEF00000000	SAMN10755749	P.b-24	Plasmodiophora brassicae
GCA_009726555.1	SGED00000000	SAMN10755751	P.b-26	Plasmodiophora brassicae
GCA_009726535.1	SGEB00000000	SAMN10755753	P.b-28	Plasmodiophora brassicae
GCA_009726525.1	SGEC00000000	SAMN10755752	P.b-27	Plasmodiophora brassicae
GCA_009726455.1	SGEA00000000	SAMN10755754	P.b-29	Plasmodiophora brassicae
GCA_009726445.1	SGDW00000000	SAMN10755758	P.b-33	Plasmodiophora brassicae
GCA_009726465.1	SGDZ00000000	SAMN10755755	P.b-30	Plasmodiophora brassicae
GCA_009726425.1	SGDX00000000	SAMN10755757	P.b-32	Plasmodiophora brassicae
GCA_009726435.1	SGDY00000000	SAMN10755756	P.b-31	Plasmodiophora brassicae
GCA_009726365.1	SGDV00000000	SAMN10755759	P.b-34	Plasmodiophora brassicae
GCA_009726355.1	SGDU00000000	SAMN10755760	P.b-35	Plasmodiophora brassicae
GCA_009726345.1	SGDT00000000	SAMN10755761	P.b-36	Plasmodiophora brassicae
GCA_009726325.1	SGDS00000000	SAMN10755762	P.b-37	Plasmodiophora brassicae
GCA_009726335.1	SGDR00000000	SAMN10755763	P.b-38	Plasmodiophora brassicae

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Whole genome DNA similarity of Plasmodiophora brassicae: New Canadian pathotypes may not be so new.

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