groundwater metagenome (ID 514088) - BioProject

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Accession: PRJNA514088 ID: 514088

groundwater metagenome

genome binning of groundwater metagenomes

This project is to obtain single genomes of microbial species from metagenome data using genome-resolved strategies (genome binning method)

Accession	PRJNA514088
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	groundwater metagenome[Taxonomy ID: 717931] unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications	Tian R et al., "Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.", Microbiome, 2020 Apr 6;8(1):51
Submission	Registration date: 25-Feb-2019 University of Oklahoma
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	47138
WGS master	155
Protein Sequences	489781
Publications
PubMed	1
PMC	1
Other datasets
BioSample	156
Assembly	155

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

155
155

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_004299485.1	SCQP00000000	SAMN10720117	FW021_bin.26	Acidobacteria bacterium
GCA_004298155.1	SCRD00000000	SAMN10720131	FW021_bin.54	Acidobacteria bacterium
GCA_004298115.1	SCRJ00000000	SAMN10720137	FW104_bin.1	Acidobacteria bacterium
GCA_004297655.1	SCUN00000000	SAMN10720219	FW602_bin.51	Acidobacteria bacterium
GCA_004298555.1	SCQM00000000	SAMN10720114	FW021_bin.20	Actinobacteria bacterium
GCA_004297305.1	SCTR00000000	SAMN10720197	FW305_bin.1	Actinobacteria bacterium
GCA_004297545.1	SCTB00000000	SAMN10720181	FW300_bin.31	Alphaproteobacteria bacterium
GCA_004297445.1	SCUK00000000	SAMN10720216	FW602_bin.38	Anaerolineae bacterium
GCA_004322345.1	SCTQ00000000	SAMN10720196	FW301-02_bin.25	Aquabacterium sp.
GCA_004297605.1	SCTF00000000	SAMN10720185	FW300_bin.41	Aquabacterium sp.
GCA_004297345.1	SCTN00000000	SAMN10720193	FW301_bin.9	Aquabacterium sp.
GCA_004322375.1	SCUC00000000	SAMN10720208	FW602_bin.19	Bacteroidetes bacterium
GCA_004322245.1	SCSS00000000	SAMN10720172	FW215_bin.33	Bacteroidetes bacterium
GCA_004322215.1	SCSM00000000	SAMN10720166	FW215_bin.12	Bacteroidetes bacterium
GCA_004297845.1	SCSP00000000	SAMN10720169	FW215_bin.19	Bacteroidetes bacterium
GCA_004298435.1	SCSF00000000	SAMN10720159	FW106-10_bin.28	Beijerinckiaceae bacterium
GCA_004298385.1	SCTX00000000	SAMN10720203	FW602_bin.10	Betaproteobacteria bacterium
GCA_004298295.1	SCUH00000000	SAMN10720213	FW602_bin.30	Betaproteobacteria bacterium
GCA_004298325.1	SCUF00000000	SAMN10720211	FW602_bin.24	Betaproteobacteria bacterium
GCA_004298985.1	SCQB00000000	SAMN10720103	DP16D_bin.23	Betaproteobacteria bacterium
GCA_004297625.1	SCTY00000000	SAMN10720204	FW602_bin.15	Betaproteobacteria bacterium
GCA_004297045.1	SCVL00000000	SAMN10720243	GW715_bin.6	Bosea sp.
GCA_004296955.1	SCVB00000000	SAMN10720233	GW715_bin.29	Brevundimonas sp.
GCA_004297085.1	SCVG00000000	SAMN10720238	GW715_bin.45	Brevundimonas sp.
GCA_004322135.1	SCSG00000000	SAMN10720160	FW106-10_bin.30	Burkholderiaceae bacterium
GCA_004322085.1	SCRR00000000	SAMN10720145	FW106-02_bin.10	Burkholderiaceae bacterium
GCA_004323695.1	SCRU00000000	SAMN10720148	FW106-02_bin.3	Burkholderiaceae bacterium
GCA_004298425.1	SCSJ00000000	SAMN10720163	FW106-10_bin.6	Burkholderiaceae bacterium
GCA_004299095.1	SCQQ00000000	SAMN10720118	FW021_bin.27	Burkholderiaceae bacterium
GCA_004298905.1	SCTK00000000	SAMN10720190	FW300_bin.58	Burkholderiaceae bacterium
GCA_004298585.1	SCQG00000000	SAMN10720108	DP16D_bin.42	Candidatus Methanoperedens sp.
GCA_004322465.1	SCVO00000000	SAMN10720246	GW928_bin.17	Candidatus Nitrosotenuis sp.
GCA_004322445.1	SCVP00000000	SAMN10720247	GW928_bin.18	Candidatus Nitrosotenuis sp.
GCA_004322105.1	SCRS00000000	SAMN10720146	FW106-02_bin.11	Candidimonas sp.
GCA_004322185.1	SCSH00000000	SAMN10720161	FW106-10_bin.31	Candidimonas sp.
GCA_004297945.1	SCRC00000000	SAMN10720130	FW021_bin.53	Candidimonas sp.
GCA_004298545.1	SCQX00000000	SAMN10720125	FW021_bin.4	Candidimonas sp.
GCA_004321985.1	SCQN00000000	SAMN10720115	FW021_bin.21	Castellaniella sp.
GCA_004322015.1	SCQT00000000	SAMN10720121	FW021_bin.31	Chitinophagaceae bacterium
GCA_004322425.1	SCVJ00000000	SAMN10720241	GW715_bin.48	Chitinophagaceae bacterium
GCA_004299085.1	SCQV00000000	SAMN10720123	FW021_bin.37	Chitinophagaceae bacterium
GCA_004297995.1	SCSW00000000	SAMN10720176	FW300_bin.13	Chitinophagaceae bacterium
GCA_004297075.1	SCVK00000000	SAMN10720242	GW715_bin.51	Chitinophagaceae bacterium
GCA_004322035.1	SCRG00000000	SAMN10720134	FW021_bin.59	Chloroflexi bacterium
GCA_004297765.1	SCTZ00000000	SAMN10720205	FW602_bin.16	Chloroflexi bacterium
GCA_004297775.1	SCUE00000000	SAMN10720210	FW602_bin.22	Chloroflexi bacterium
GCA_004298915.1	SCTE00000000	SAMN10720184	FW300_bin.39	Chloroflexi bacterium
GCA_004297395.1	SCUO00000000	SAMN10720220	FW602_bin.52	Chloroflexi bacterium
GCA_004297315.1	SCTU00000000	SAMN10720200	FW305_bin.6	Dehalococcoidia bacterium
GCA_004296805.1	SCVR00000000	SAMN10720249	GW928_bin.20	Dehalococcoidia bacterium
GCA_004297475.1	SCUA00000000	SAMN10720206	FW602_bin.17	Dehalococcoidia bacterium
GCA_004299215.1	SCTD00000000	SAMN10720183	FW300_bin.36	Frankiales bacterium
GCA_004298605.1	SCPW00000000	SAMN10720098	DP16D_bin.1	Gallionella sp.
GCA_004297065.1	SCUU00000000	SAMN10720226	GW715_bin.18	Gallionellaceae bacterium
GCA_004297165.1	SCUJ00000000	SAMN10720215	FW602_bin.35	Gammaproteobacteria bacterium
GCA_004297335.1	SCUD00000000	SAMN10720209	FW602_bin.2	Gammaproteobacteria bacterium
GCA_004298065.1	SCRL00000000	SAMN10720139	FW104_bin.7	Gammaproteobacteria bacterium
GCA_004322325.1	SCTP00000000	SAMN10720195	FW301-02_bin.23	Gammaproteobacteria bacterium
GCA_004297105.1	SCVE00000000	SAMN10720236	GW715_bin.41	Herbiconiux sp.
GCA_004299665.1	SCQZ00000000	SAMN10720127	FW021_bin.43	Jatrophihabitans sp.
GCA_004297865.1	SCSO00000000	SAMN10720168	FW215_bin.17	Legionella sp.
GCA_004322525.1	SCUY00000000	SAMN10720230	GW715_bin.24	Lysobacter sp.
GCA_004321965.1	SCQC00000000	SAMN10720104	DP16D_bin.29	Magnetospirillum sp.
GCA_004299305.1	SCPZ00000000	SAMN10720101	DP16D_bin.19	Methylobacter sp.
GCA_004322395.1	SCTW00000000	SAMN10720202	FW305_bin.9	Methylobacter sp.
GCA_004299145.1	SCQD00000000	SAMN10720105	DP16D_bin.30	Methylococcaceae bacterium
GCA_004299465.1	SCST00000000	SAMN10720173	FW215_bin.51	Methylovulum sp.
GCA_004297935.1	SCRE00000000	SAMN10720132	FW021_bin.57	Microbacteriaceae bacterium
GCA_004298145.1	SCRH00000000	SAMN10720135	FW021_bin.60	Mycobacterium sp.
GCA_004297725.1	SCUS00000000	SAMN10720224	GW715_bin.15	Myxococcaceae bacterium
GCA_004299525.1	SCSQ00000000	SAMN10720170	FW215_bin.27	Nanoarchaeota archaeon
GCA_004297665.1	SCUP00000000	SAMN10720221	GW199_bin.3	Nitrosarchaeum sp.
GCA_004321915.1	SCQE00000000	SAMN10720106	DP16D_bin.35	Nitrospirae bacterium
GCA_004321925.1	SCQH00000000	SAMN10720109	DP16D_bin.48	Nitrospirae bacterium
GCA_004298625.1	SCSY00000000	SAMN10720178	FW300_bin.22	Nitrospirae bacterium
GCA_004298335.1	SCTG00000000	SAMN10720186	FW300_bin.52	Nitrospirae bacterium
GCA_004297235.1	SCUR00000000	SAMN10720223	GW715_bin.13	Nitrospirae bacterium
GCA_004296885.1	SCVN00000000	SAMN10720245	GW928_bin.16	Nitrospirae bacterium
GCA_004296865.1	SCVQ00000000	SAMN10720248	GW928_bin.19	Nitrospirae bacterium
GCA_004297875.1	SCSK00000000	SAMN10720164	FW106-10_bin.9	Pandoraea sp.
GCA_004299625.1	SCRV00000000	SAMN10720149	FW106-02_bin.5	Pandoraea sp.
GCA_004322045.1	SCRN00000000	SAMN10720141	FW106_bin.13	Paraburkholderia sp.
GCA_004322125.1	SCSA00000000	SAMN10720154	FW106-10_bin.11	Paraburkholderia sp.
GCA_004297925.1	SCSD00000000	SAMN10720157	FW106-10_bin.23	Paraburkholderia sp.
GCA_004298475.1	SCRP00000000	SAMN10720143	FW106_bin.8	Paraburkholderia sp.
GCA_004296925.1	SCVI00000000	SAMN10720240	GW715_bin.47	Patescibacteria group bacterium
GCA_004297215.1	SCUM00000000	SAMN10720218	FW602_bin.45	Patescibacteria group bacterium
GCA_004297205.1	SCUL00000000	SAMN10720217	FW602_bin.41	Patescibacteria group bacterium
GCA_004298405.1	SCSL00000000	SAMN10720165	FW215_bin.11	Patescibacteria group bacterium
GCA_004298345.1	SCTV00000000	SAMN10720201	FW305_bin.8	Patescibacteria group bacterium
GCA_004298615.1	SCPX00000000	SAMN10720099	DP16D_bin.14	Patescibacteria group bacterium
GCA_004297735.1	SCTI00000000	SAMN10720188	FW300_bin.56	Patescibacteria group bacterium
GCA_004297805.1	SCTJ00000000	SAMN10720189	FW300_bin.57	Patescibacteria group bacterium
GCA_004299265.1	SCQJ00000000	SAMN10720111	DP16D_bin.6	Patescibacteria group bacterium
GCA_004299275.1	SCSU00000000	SAMN10720174	FW215_bin.7	Patescibacteria group bacterium
GCA_004322265.1	SCSZ00000000	SAMN10720179	FW300_bin.23	Patescibacteria group bacterium
GCA_004322205.1	SCSN00000000	SAMN10720167	FW215_bin.14	Patescibacteria group bacterium
GCA_004321885.1	SCQK00000000	SAMN10720112	DP16D_bin.9	Patescibacteria group bacterium
GCA_004322365.1	SCTS00000000	SAMN10720198	FW305_bin.14	Patescibacteria group bacterium
GCA_004299445.1	SCTC00000000	SAMN10720182	FW300_bin.35	Phenylobacterium sp.
GCA_004297125.1	SCVD00000000	SAMN10720235	GW715_bin.37	Phenylobacterium sp.
GCA_004296785.1	SCVU00000000	SAMN10720252	GW928_bin.9	Planctomycetes bacterium
GCA_004322295.1	SCTH00000000	SAMN10720187	FW300_bin.53	Porticoccaceae bacterium
GCA_004298105.1	SCRX00000000	SAMN10720151	FW106-02_bin.7	Pusillimonas sp. (ex Stolz et al. 2005)
GCA_004322585.1	SCTO00000000	SAMN10720194	FW301-02_bin.13	Reyranella sp.
GCA_004296815.1	SCVT00000000	SAMN10720251	GW928_bin.5	Reyranella sp.
GCA_004296935.1	SCVH00000000	SAMN10720239	GW715_bin.46	Reyranella sp.
GCA_004297265.1	SCUT00000000	SAMN10720225	GW715_bin.16	Reyranella sp.
GCA_004297405.1	SCVC00000000	SAMN10720234	GW715_bin.31	Reyranella sp.
GCA_004299545.1	SCRB00000000	SAMN10720129	FW021_bin.52	Rhizobiaceae bacterium
GCA_004297635.1	SCUQ00000000	SAMN10720222	GW715_bin.11	Rhizorhabdus sp.
GCA_004298015.1	SCSE00000000	SAMN10720158	FW106-10_bin.24	Rhodanobacter sp.
GCA_004298045.1	SCRM00000000	SAMN10720140	FW106_bin.11	Rhodanobacter sp.
GCA_004297905.1	SCRW00000000	SAMN10720150	FW106-02_bin.6	Rhodanobacter sp.
GCA_004298975.1	SCRY00000000	SAMN10720152	FW106-02_bin.8	Rhodanobacter sp.
GCA_004298505.1	SCRO00000000	SAMN10720142	FW106_bin.6	Rhodanobacter sp.
GCA_004298705.1	SCQO00000000	SAMN10720116	FW021_bin.24	Rhodanobacter sp.
GCA_004298935.1	SCSI00000000	SAMN10720162	FW106-10_bin.33	Rhodanobacter sp.
GCA_004299745.1	SCQR00000000	SAMN10720119	FW021_bin.29	Rhodanobacter sp.
GCA_004299675.1	SCRZ00000000	SAMN10720153	FW106-02_bin.9	Rhodanobacter sp.
GCA_004322165.1	SCSB00000000	SAMN10720155	FW106-10_bin.17	Rhodanobacter sp.
GCA_004322005.1	SCRF00000000	SAMN10720133	FW021_bin.58	Rhodanobacter sp.
GCA_004299705.1	SCQS00000000	SAMN10720120	FW021_bin.3	Rhodanobacteraceae bacterium
GCA_004299555.1	SCQU00000000	SAMN10720122	FW021_bin.35	Rhodanobacteraceae bacterium
GCA_004298965.1	SCQW00000000	SAMN10720124	FW021_bin.39	Rhodanobacteraceae bacterium
GCA_004297485.1	SCTM00000000	SAMN10720192	FW301_bin.2	Rhodospirillaceae bacterium
GCA_004299025.1	SCQI00000000	SAMN10720110	DP16D_bin.55	Rhodospirillales bacterium
GCA_004322545.1	SCUV00000000	SAMN10720227	GW715_bin.19	Rugosibacter sp.
GCA_004322535.1	SCUZ00000000	SAMN10720231	GW715_bin.26	Rugosibacter sp.
GCA_004296905.1	SCVM00000000	SAMN10720244	GW928_bin.10	Rugosibacter sp.
GCA_004297555.1	SCSV00000000	SAMN10720175	FW300_bin.11	Salinibacterium sp.
GCA_004297645.1	SCUG00000000	SAMN10720212	FW602_bin.25	Saprospiraceae bacterium
GCA_004323705.1	SCSC00000000	SAMN10720156	FW106-10_bin.21	Sinobacteraceae bacterium
GCA_004297005.1	SCVA00000000	SAMN10720232	GW715_bin.28	Sinobacteraceae bacterium
GCA_004298465.1	SCRT00000000	SAMN10720147	FW106-02_bin.14	Sinobacteraceae bacterium
GCA_004298745.1	SCRQ00000000	SAMN10720144	FW106_bin.9	Sinobacteraceae bacterium
GCA_004297015.1	SCUX00000000	SAMN10720229	GW715_bin.21	Sphingobium sp.
GCA_004297825.1	SCSX00000000	SAMN10720177	FW300_bin.19	Spirochaetes bacterium
GCA_004296945.1	SCVF00000000	SAMN10720237	GW715_bin.44	Variovorax sp.
GCA_004321905.1	SCQF00000000	SAMN10720107	DP16D_bin.41	Verrucomicrobia bacterium
GCA_004297495.1	SCTL00000000	SAMN10720191	FW301_bin.11	Verrucomicrobia bacterium
GCA_004297465.1	SCUB00000000	SAMN10720207	FW602_bin.18	Xanthobacteraceae bacterium
GCA_004297225.1	SCUI00000000	SAMN10720214	FW602_bin.31	Xanthomonadaceae bacterium
GCA_004297575.1	SCSR00000000	SAMN10720171	FW215_bin.29	archaeon
GCA_004297385.1	SCUW00000000	SAMN10720228	GW715_bin.20	bacterium
GCA_004297985.1	SCRA00000000	SAMN10720128	FW021_bin.48	bacterium
GCA_004298075.1	SCRK00000000	SAMN10720138	FW104_bin.10	bacterium
GCA_004298665.1	SCQY00000000	SAMN10720126	FW021_bin.42	bacterium
GCA_004298675.1	SCRI00000000	SAMN10720136	FW021_bin.74	bacterium
GCA_004299235.1	SCQL00000000	SAMN10720113	FW021_bin.18	bacterium
GCA_004298725.1	SCQA00000000	SAMN10720102	DP16D_bin.2	bacterium
GCA_004299495.1	SCPY00000000	SAMN10720100	DP16D_bin.15	bacterium
GCA_004322275.1	SCTA00000000	SAMN10720180	FW300_bin.28	bacterium
GCA_004322435.1	SCTT00000000	SAMN10720199	FW305_bin.15	bacterium
GCA_004322455.1	SCVS00000000	SAMN10720250	GW928_bin.3	bacterium

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groundwater metagenome

genome binning of groundwater metagenomes

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