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Accession: PRJNA49881 ID: 49881

Scardovia wiggsiae F0424

Reference genome for the Human Microbiome Project

See Genome Information for Scardovia wiggsiae
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This project is a component of the Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)
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2947 additional projects are components of the Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP).
Reference genome for the Human Microbiome Project

Another assembly of this organism was generated independently from the HMP reference genome, using PacBio and Illumina sequence reads.

AccessionPRJNA49881
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismScardovia wiggsiae F0424[Taxonomy ID: 857290]
Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Scardovia; Scardovia wiggsiae; Scardovia wiggsiae F0424
PublicationsRibeiro FJ et al., "Finished bacterial genomes from shotgun sequence data.", Genome Res, 2012 Nov;22(11):2270-7
SubmissionRegistration date: 15-Jun-2012
Broad Institute
Locus Tag PrefixHMPREF9156
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)11
WGS master2
SRA Experiments13
Protein Sequences1243
Publications
PubMed1
PMC1
Other datasets
BioSample2
Assembly2
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases13
Data volume, Mbytes46898

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