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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)10060523
WGS master770
Genomic DNA4002
Transcript9958578
SRA Experiments3817
Protein Sequences8671766
Publications
PubMed88
PMC46
Other datasets
BioSample876
Assembly789
SRA Data Details
ParameterValue
Data volume, Gbases107,551
Data volume, Tbytes40.64
This project encompasses the following 485 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace
No data links
Total

2
6
8
BioProject
accession
Assembly
level
NameTitle
PRJNA957802 SRA or TraceCross-species mammalian motor cortex sequencingCross-species mammalian motor cortex sequencing
PRJNA1106996 No data linksDendrobates auratusDendrobates auratus (green and black poison frog) genome, aDenAur1, maternal haplotype
PRJNA1106997 No data linksDendrobates auratusDendrobates auratus (green and black poison frog) genome, aDenAur1, paternal haplotype
PRJNA1123828 No data linksMacaca nemestrinaMacaca nemestrina (pig-tailed macaque) genome, mMacNem1, haplotype 1
PRJNA1123829 No data linksMacaca nemestrinaMacaca nemestrina (pig-tailed macaque) genome, mMacNem1, haplotype 2
List all 8 'Genome sequencing' projects...
Umbrella project476
BioProject
accession
OrganismTitle
PRJEB71619Abramis bramaAbramis brama (common bream)
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJEB40702Acanthopagrus latusAcanthopagrus latus (yellowfin sea bream)
PRJEB48396Accipiter gentilisAccipiter gentilis (northern goshawk)
PRJEB35914Acipenser ruthenusAcipenser ruthenus (sterlet)
List all 476 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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