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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)12526259
WGS master1070
Genomic DNA7264
Transcript12388327
SRA Experiments6120
Protein Sequences10956900
Publications
PubMed100
PMC52
Other datasets
BioSample1568
Assembly1085
SRA Data Details
ParameterValue
Data volume, Gbases207,809
Data volume, Tbytes81.31
This project encompasses the following 584 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace
No data links
Total

2
5
7
BioProject
accession
Assembly
level
NameTitle
PRJNA957802 SRA or TraceCross-species mammalian motor cortex sequencingCross-species mammalian motor cortex sequencing
PRJNA1191145 No data linksMyuchelys georgesiMyuchelys georgesi (Bellinger river turtle) genome, rMyuGeo1, primary haplotype
PRJNA1245601 No data linksSpheniscus demersusSpheniscus demersus (African penguin) genome, bSphDem1, haplotype 1
PRJNA1245602 No data linksSpheniscus demersusSpheniscus demersus (African penguin) genome, bSphDem1, haplotype 2
PRJNA1258044 No data linksTenrec ecaudatusTenrec ecaudatus (tailless tenrec) genome, mTenEca1, haplotype 1
List all 7 'Genome sequencing' projects...
Umbrella project576
BioProject
accession
NameTitle
PRJEB71619Abramis bramaAbramis brama (common bream)
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJEB40702Acanthopagrus latusAcanthopagrus latus (yellowfin sea bream)
PRJEB80343Accipiter nisusAccipiter nisus (Eurasian sparrowhawk)
PRJEB35914Acipenser ruthenusAcipenser ruthenus (sterlet)
List all 576 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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