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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6460471
WGS master498
Genomic DNA2228
Transcript6410830
SRA Experiments1213
Protein Sequences5860115
Publications
PubMed76
PMC40
Other datasets
BioSample561
Assembly496
SRA Data Details
ParameterValue
Data volume, Gbases20,053
Data volume, Tbytes8.98
This project encompasses the following 282 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace
No data links
Total

2
12
14
BioProject
accession
Assembly
level
NameTitle
PRJNA957802 SRA or TraceCross-species mammalian motor cortex sequencingCross-species mammalian motor cortex sequencing
PRJNA973804 No data linksCyclura pinguisCyclura pinguis (stout iguana) genome, rCycPin1, haplotype 1
PRJNA973807 No data linksCyclura pinguisCyclura pinguis (stout iguana) genome, rCycPin1, haplotype 2
PRJNA923799 No data linksDasypus novemcinctusDasypus novemcinctus (nine-banded armadillo) genome, mDasNov1, haplotype 1
PRJNA923800 No data linksDasypus novemcinctusDasypus novemcinctus (nine-banded armadillo) genome, mDasNov1, haplotype 2
List all 14 'Genome sequencing' projects...
Umbrella project267
BioProject
accession
OrganismTitle
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJEB40702Acanthopagrus latusAcanthopagrus latus (yellowfin sea bream)
PRJEB48396Accipiter gentilisAccipiter gentilis (northern goshawk)
PRJEB35914Acipenser ruthenusAcipenser ruthenus (sterlet)
PRJEB39769Acomys russatusAcomys russatus (golden spiny mouse)
List all 267 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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