U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4924558
WGS master301
Genomic DNA1395
Transcript4887493
SRA Experiments1017
Protein Sequences4537827
Publications
PubMed68
PMC32
Other datasets
BioSample360
Assembly301
SRA Data Details
ParameterValue
Data volume, Gbases12,545
Data volume, Tbytes6.34
This project encompasses the following 174 sub-projects:
Project TypeNumber of Projects
Genome sequencing

3
1
1
14
19
BioProject
accession
Assembly
level
NameTitle
PRJNA838368 No data linksGallus gallusGallus gallus (red junglefowl) genome, bGalGal4, alternate haplotype
PRJNA838369 No data linksGallus gallusGallus gallus (red junglefowl) genome, bGalGal4, primary haplotype
PRJNA838370 No data linksGallus gallusGallus gallus (red junglefowl) genome, bGalGal5, primary haplotype
PRJNA838371 No data linksGallus gallusGallus gallus (red junglefowl) genome, bGalGal5, alternate haplotype
PRJNA768329 ChromosomesGirardinichthys multiradiatusGirardinichthys multiradiatus Genome sequencing and assembly
List all 19 'Genome sequencing' projects...
Umbrella project154
BioProject
accession
OrganismTitle
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJEB40702Acanthopagrus latusAcanthopagrus latus (yellowfin sea bream)
PRJEB48396Accipiter gentilisAccipiter gentilis (northern goshawk)
PRJEB35914Acipenser ruthenusAcipenser ruthenus (sterlet)
PRJEB39769Acomys russatusAcomys russatus (golden spiny mouse)
List all 154 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

Supplemental Content

Related Resources

Recent activity

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...
    Support Center