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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1305967
WGS master72
Genomic DNA553
Transcript1296304
SRA Experiments64
Protein Sequences1161109
Publications
PubMed32
PMC16
Other datasets
BioSample137
Assembly73
SRA Data Details
ParameterValue
Data volume, Gbases329
Data volume, Tbytes0.13
This project encompasses the following 94 sub-projects:
Project TypeNumber of Projects
Umbrella project93
BioProject
accession
NameTitle
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJNA566188Alca tordaAlca torda (Razorbill) genome assembly
PRJEB30393Anabas testudineusAnabas testudineus (climbing perch) genome assembly, fAnaTes1.2
PRJNA562167Anableps anablepsAnableps anableps (Largescale four-eyed fish) genome, fAnaAna1
PRJNA562168Anguilla anguillaAnguilla anguilla (European eel) genome, fAngAng1
List all 93 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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