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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Publications
PubMed124
PMC66
Other datasets
Assembly2344
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes18
SRA Data Details
ParameterValue
Data volume, Gbases513,047
Data volume, Tbytes223.13
This project encompasses the following 1213 sub-projects:
Project TypeNumber of Projects
Genome sequencing

2
23
23
14
62
BioProject
accession
Assembly
level
NameTitle
PRJNA735624 ChromosomesAgelaius phoeniceusAgelaius phoeniceus (red-winged blackbird) Genome Sequencing and Assembly
PRJNA706157 ChromosomesBranchiostoma floridae x Branchiostoma belcheriBranchiostoma floridae x Branchiostoma belcheri principal pseudohaplotype genome sequencing
PRJNA1402437 ChromosomesBranchiostoma floridae x Branchiostoma belcheriBranchiostoma floridae x Branchiostoma belcheri RefSeq BioProject
PRJNA647830 ChromosomesBranchiostoma floridae x Branchiostoma japonicumBranchiostoma floridae x Branchiostoma japonicum Genome sequencing and assembly
PRJNA1402427 ChromosomesBranchiostoma floridae x Branchiostoma japonicumBranchiostoma floridae x Branchiostoma japonicum RefSeq BioProject
List all 65 'Genome sequencing' projects...
Umbrella project1147
BioProject
accession
NameTitle
PRJEB64126ATLASea : An Atlas of eukaryotic marine genomesATLASea : An Atlas of eukaryotic marine genomes
PRJEB71619Abramis bramaAbramis brama (common bream)
PRJEB98762Acanthis cabaretAcanthis cabaret (lesser redpoll)
PRJEB120905Acanthis flammeaAcanthis flammea (common redpoll), bAcaFla
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
List all 1147 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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