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Accession: PRJNA48429 ID: 48429

Oryza glumipatula

Oryza glumipatula Genome sequencing and assembly

See Genome Information for Oryza glumipatula
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This project is a component of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice
This project is a component of the Comparison of transposable elements across the various genome types of the Oryza genus
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8 additional projects are related by organism.
15 additional projects are components of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice.
14 additional projects are components of the Comparison of transposable elements across the various genome types of the Oryza genus.
Oryza glumaepatula is a wild rice found in South America. It has a AA genome. A shotgun library of randomly sheared DNA was used to generate sequence for repetitive DNA analysis.
AccessionPRJNA48429
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismOryza glumipatula[Taxonomy ID: 40148]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula
SubmissionRegistration date: 6-Feb-2013
Oryza Map Alignment Project (OMAP)
- Arizona Genomics Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)13
WGS master1
SRA Experiments14
Other datasets
BioSample12
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000576495.2ChromosomeALNU00000000
12
SAMN02981440
Oryza glumipatula
SRA Data Details
ParameterValue
Data volume, Gbases267
Data volume, Tbytes0.18

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