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Accession: PRJNA48107 ID: 48107

Oryza nivara cultivar:IRGC:100897

OMAP clone end sequence project for Oryza nivara

See Genome Information for Oryza nivara
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This project is a component of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice
This project is a component of the Comparison of transposable elements across the various genome types of the Oryza genus
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6 additional projects are related by organism.
15 additional projects are components of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice.
14 additional projects are components of the Comparison of transposable elements across the various genome types of the Oryza genus.
Oryza nivara is a wild rice found in India. It has an AA genome. Breeders are interested in this organism because it exhibits resistance to grassy stunt virus. More...
AccessionPRJNA48107
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismOryza nivara[Taxonomy ID: 4536]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza nivara
Publications
  • Zuccolo A et al., "Transposable element distribution, abundance and role in genome size variation in the genus Oryza.", BMC Evol Biol, 2007 Aug 29;7:152
  • Ammiraju JS et al., "The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.", Genome Res, 2006 Jan;16(1):140-7
SubmissionRegistration date: 19-Feb-2014
Oryza Map Alignment Project (OMAP)
- Arizona Genomics Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3118
WGS master2
Genomic DNA3103
SRA Experiments15
Publications
PubMed2
PMC2
Other datasets
BioSample14
Assembly2
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases509
Data volume, Tbytes0.32

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