This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA477900; GEO: GSE116262 |
| Type | Umbrella project |
| Publications | - Scheibner K et al., "Epithelial cell plasticity drives endoderm formation during gastrulation.", Nat Cell Biol, 2021 Jul;23(7):692-703
- Cernilogar FM et al., "Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2.", Nucleic Acids Res, 2019 Sep 26;47(17):9069-9086
|
| Submission | Registration date: 26-Jun-2018
Biomedical Center, LMU Munich |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 94 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 94 |
| GEO DataSets | 7 |
Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 4 |
BioProject
accession | Organism | Title |
|---|
| PRJNA477882 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [ChIP-seq Histone-Modifications] (Biomedical Center, LMU Munich) | | PRJNA477871 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [ATAC-seq] (Biomedical Center, LMU Munich) | | PRJNA477894 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [MeDIP-seq] (Biomedical Center, LMU Munich) | | PRJNA477887 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [ChIP-seq Transcription Factors] (Biomedical Center, LMU Munich) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA477893 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [RNA-seq low input] (Biomedical Center, LMU Munich) | | PRJNA477890 | Mus musculus | Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [RNA-seq] (Biomedical Center, LMU Munich) |
|