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Accession: PRJNA477851 ID: 477851

De novo assembly of E. coli ER1709 strain

Generating de novo assembly of E. coli ER1709 strain using the Hierarchical Genome Assembly Process (HGAP) for long single pass reads generated by the PacBio SMRT sequencing.
AccessionPRJNA477851
Data TypeRaw sequence reads
ScopeMultispecies
PublicationsZatopek KM et al., "RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale.", DNA Repair (Amst), 2019 Aug;80:36-44
SubmissionRegistration date: 25-Jun-2018
New England Biolabs
RelevanceMolecular Biology
Locus Tag PrefixDQ225
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)1
SRA Experiments1
Protein Sequences4292
Publications
PubMed1
Other datasets
BioSample1
Assembly1
Supplementary data
Base modification1
Assembly details:
AssemblyLevelChrsBioSampleTaxonomy
GCA_003717595.1Complete genomeSAMN09483841
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes3097

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