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Accession: PRJNA476981 ID: 476981

Path-seq identifies an essential mycolate remodeling program for mycobacterial adaptation in host cells [ChIP-seq]

See Genome Information for Mycolicibacterium smegmatis
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This project is a component of the An essential mycolate remodeling program for mycobacterial adaptation in host cells
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1 additional project is a component of the An essential mycolate remodeling program for mycobacterial adaptation in host cells.
100 additional projects are related by organism.
Study of the DNA binding sites of the transcriptional regulator MSMEG_0916 through chromatin immunoprecipitation couple with deep sequenicng (ChIP-seq) and induced or uninduced overexpression of MSMEG_0916 in Mycobacterium smegmatis Overall design: Cultures of Mycobacterium smegmatis with pDTCF-MSMEG_0916 were grown in the presence or absence of anhydrotetracycline (ATc) for 4 hour and DNA-protein interactions were characterized by cross-linking 50 ml of culture with 1% formaldehyde for 30 min. More...
AccessionPRJNA476981; GEO: GSE116084
Data TypeEpigenomics
ScopeMultiisolate
OrganismMycolicibacterium smegmatis[Taxonomy ID: 1772]
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium smegmatis
PublicationsPeterson EJ et al., "Path-seq identifies an essential mycolate remodeling program for mycobacterial host adaptation.", Mol Syst Biol, 2019 Mar 4;15(3):e8584
SubmissionRegistration date: 20-Jun-2018
Baliga, Institute for Systems Biology
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments2
Publications
PubMed1
PMC1
Other datasets
BioSample2
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases3
Data volume, Mbytes1299

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