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Accession: PRJNA476937 ID: 476937

Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk (human)

See Genome Information for Homo sapiens
Edited mendelian disease SNP rs199643834 responsible for Birt-Hogg-Dubé Syndrome into 293T cells using CRISPR/Cas9 Overall design: Human 293T cells were edited using CRISPR/Cas9 and a homologus template containing the desired SNP. Monoclonal lines were generated and genotyped.
AccessionPRJNA476937; GEO: GSE116061
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsCastel SE et al., "Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk.", Nat Genet, 2018 Sep;50(9):1327-1334
SubmissionRegistration date: 20-Jun-2018
Lappalainen, New York Genome Center
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments13
Publications
PubMed1
PMC1
Other datasets
BioSample13
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases140
Data volume, Mbytes41296

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