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Accession: PRJNA476928 ID: 476928

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Geissois genus (Cunoniaceae) endemic from New Caledonia

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This project is a component of the Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from diverse genera and geographic locations
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6 additional projects are components of the Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from diverse genera and geographic locations.
The leaf transcriptome of the nickel hyperaccumulator Geissois pruinosa (Rubiaceae) endemic from New Caledonia was compared to the closely related non-accumulator Geissois racemosa, living respectively in serpentine maquis or rainforest on limestone, to identity differentially expressed genes potentially involved in Ni hyperaccumulation. More...
AccessionPRJNA476928; GEO: GSE116048
Data TypeTranscriptome or Gene expression
ScopeMultispecies
PublicationsGarcía de la Torre VS et al., "Wide cross-species RNA-Seq comparison reveals convergent molecular mechanisms involved in nickel hyperaccumulation across dicotyledons.", New Phytol, 2021 Jan;229(2):994-1006
SubmissionRegistration date: 20-Jun-2018
Institute for Integrative Biology of the Cell (I2BC), Biological Science, CNRS
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments6
Publications
PubMed1
Other datasets
BioSample6
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes29
SRA Data Details
ParameterValue
Data volume, Gbases33
Data volume, Mbytes21297

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  • Transcriptomic comparison between nickel hyperaccumulator and non-accumulator pl...
    Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Geissois genus (Cunoniaceae) endemic from New Caledonia
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