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Accession: PRJNA476566 ID: 476566

Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming II (house mouse)

See Genome Information for Mus musculus
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This project is a component of the Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming
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2 additional projects are components of the Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming.
47588 additional projects are related by organism.
We collected duplicate samples at the various time points, generated single cell suspensions and performed scRNA-Seq. More...
AccessionPRJNA476566; GEO: GSE115943
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsSchiebinger G et al., "Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.", Cell, 2019 Feb 7;176(4):928-943.e22
SubmissionRegistration date: 18-Jun-2018
Regev Lab, Broad Institute
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments126
Publications
PubMed1
PMC1
Other datasets
BioSample126
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3548
SRA Data Details
ParameterValue
Data volume, Gbases1,080
Data volume, Tbytes0.45

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