This SuperSeries is composed of the SubSeries listed below.
The reanalyzed early embryo ChIP-seq data can be found in the GSE115704 SubSeries.
Overall design: Refer to individual Series
| Accession | PRJNA475792; GEO: GSE115709 |
| Type | Umbrella project |
| Publications | Tabuchi TM et al., "Caenorhabditis elegans sperm carry a histone-based epigenetic memory of both spermatogenesis and oogenesis.", Nat Commun, 2018 Oct 17;9(1):4310 |
| Submission | Registration date: 12-Jun-2018
MCD Biology, UC Santa Cruz |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 54 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 54 |
| GEO DataSets | 5 |
Epigenome of C. elegans sperm, oocytes, and early embryos (MNase-seq, ChIP-seq, RNA-seq) encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA475794 | Caenorhabditis elegans | Distribution of histone modifications across the genome in C. elegans sperm vs. oocytes vs. early embryos (MCD Biology, UC Santa Cruz) | | PRJNA475796 | Caenorhabditis elegans | Nucleosome occupancy of C. elegans wild-type (N2) early stage embryos vs. mature sperm from him-8(e1489) males (MCD Biology, UC Santa Cruz) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA475795 | Caenorhabditis elegans | C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, 'red-head worms') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control) (MCD Biology, UC Santa Cruz) | | PRJNA475797 | Caenorhabditis elegans | RNA-seq transcriptome profiling of 1) C. elegans male germlines vs. oogenic germlines, and 2) male germlines, sperm, and F1 offspring germlines when offspring inherited sperm chromatin lacking H3K27me3. (MCD Biology, UC Santa Cruz) |
|