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Accession: PRJNA475576 ID: 475576

Compare chromatin open regions (OCRs) between PTEN-KD and PTEN/BRG1-KD 22RV-1 cells by ATAC-Seq (human)

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This project is a component of the SWI/SNF Chromatin Remodeling Factor BRG1 is Synthetic Required for PTEN-deficient Prostate Cancer
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2 additional projects are components of the SWI/SNF Chromatin Remodeling Factor BRG1 is Synthetic Required for PTEN-deficient Prostate Cancer.
66644 additional projects are related by organism.
Transposase-accessible chromatin using sequencing (ATAC-seq) assay was performed to compare chromatin open regions (OCRs) between PTEN-KD and PTEN/BRG1-KD 22RV-1 cells. More...
AccessionPRJNA475576; GEO: GSE115617
Data TypeEpigenomics
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsDing Y et al., "Chromatin remodeling ATPase BRG1 and PTEN are synthetic lethal in prostate cancer.", J Clin Invest, 2019 Feb 1;129(2):759-773
SubmissionRegistration date: 11-Jun-2018
Laboratory of Tumor Progression and Metastasis, Institute of Health Sciences, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments2
Publications
PubMed1
PMC1
Other datasets
BioSample2
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes522
SRA Data Details
ParameterValue
Data volume, Gbases12
Data volume, Mbytes3729

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