This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA475569; GEO: GSE115619 |
| Type | Umbrella project |
| Publications | Ding Y et al., "Chromatin remodeling ATPase BRG1 and PTEN are synthetic lethal in prostate cancer.", J Clin Invest, 2019 Feb 1;129(2):759-773 |
| Submission | Registration date: 11-Jun-2018
Laboratory of Tumor Progression and Metastasis, Institute of Health Sciences, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 9 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 9 |
| GEO DataSets | 4 |
SWI/SNF Chromatin Remodeling Factor BRG1 is Synthetic Required for PTEN-deficient Prostate Cancer encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA475576 | Homo sapiens | Compare chromatin open regions (OCRs) between PTEN-KD and PTEN/BRG1-KD 22RV-1 cells by ATAC-Seq (Laboratory of Tumor Progression...) | | PRJNA475577 | Homo sapiens | BRG1 occupancy profiling by high throughput sequencing from control and PTEN knockdown 22RV-1 cells (Laboratory of Tumor Progression...) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA475578 | Homo sapiens | Transcriptome analysis of control and BRG1-depleted 22RV-1 cells with or without PTEN ablation (Laboratory of Tumor Progression...) |
|