Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA474907 ID: 474907

Bacteria

Genome sequencing and assembly - library of cultured bacterial species from laboratory mouse gut microbiota from the University of Toronto

Navigate Up
This project is a component of the The Lactobacillus genus, a use case for Bactopia.
Navigate Across
215 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..
Bank of bacterial mono-isolates from laboratory mouse gut microbiota
AccessionPRJNA474907
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 14-Apr-2019
University of Toronto
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4275
WGS master46
SRA Experiments46
Protein Sequences120463
Other datasets
BioSample47
Assembly46
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
46
46
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_004801615.1ContigSSTJ00000000SAMN11366399
NM80_B27
Adlercreutzia caecimuris
GCA_009767905.1ContigWSRR00000000SAMN13322329
NM66_B29
Adlercreutzia mucosicola
GCA_004792655.1ContigSRZC00000000SAMN10878314
NM73_A23
Bacteroidales bacterium
GCA_004793975.1ContigSRYB00000000SAMN10878287
NM04_E33
Bacteroidales bacterium
GCA_004801755.1ContigSSTL00000000SAMN11366397
NM76_A32
Bacteroidales bacterium
GCA_004794035.2ContigSRZD00000000SAMN10878315
NM74_B14
Bacteroidales bacterium
GCA_004794095.1ContigSRZA00000000SAMN10878312
NM70_E10
Bacteroides acidifaciens
GCA_004793675.1ContigSRYX00000000SAMN10878309
NM63_1-25
Bacteroides caecimuris
GCA_004801645.1ContigSSTN00000000SAMN11366394
NM45_B5
Bacteroides faecichinchillae
GCA_004793475.1ContigSRYZ00000000SAMN10878311
NM69_E16B
Bacteroides sp. NM69_E16B
GCA_004801625.1ContigSSTF00000000SAMN11366404
NM87_A27A
Bifidobacterium pseudolongum
GCA_009767885.1ContigWSRQ00000000SAMN13322330
NM79_F5
Clostridium chromiireducens
GCA_004793785.1ContigSRYQ00000000SAMN10878302
NM49_B9-7
Clostridium perfringens
GCA_004794105.1ContigSRYR00000000SAMN10878303
NM50_B9-20
Clostridium sartagoforme
GCA_004793925.1ContigSRYE00000000SAMN10878290
NM07_P-09
Coriobacteriaceae bacterium
GCA_004793665.1ContigSRYF00000000SAMN10878291
NM08_P-01
Coriobacteriaceae bacterium
GCA_004793935.1ContigSRYT00000000SAMN10878305
NM58_B2-5
Enterococcus faecalis
GCA_004793905.1ContigSRYS00000000SAMN10878304
NM56_O-09
Enterococcus hirae
GCA_004793465.1ContigSRYC00000000SAMN10878288
NM05_H27
Enterorhabdus sp. NM05_H27
GCA_004793885.1ContigSRYG00000000SAMN10878292
NM09_H32
Erysipelotrichaceae bacterium
GCA_004801725.1ContigSSTH00000000SAMN11366402
NM84_B9-29
Escherichia coli
GCA_004801715.1ContigSSTO00000000SAMN11366393
NM43_TS4-1
Klebsiella variicola
GCA_004793545.1ContigSRYA00000000SAMN10878285
NM01_1-7b
Lachnospiraceae bacterium
GCA_004793585.1ContigSRZB00000000SAMN10878313
NM72_1-8
Lachnospiraceae bacterium
GCA_004793775.1ContigSRYV00000000SAMN10878307
NM61_E11
Lactobacillus intestinalis
GCA_004793575.1ContigSRYU00000000SAMN10878306
NM60_B2-8
Lactobacillus johnsonii
GCA_004793755.1ContigSRYL00000000SAMN10878297
NM28_3M-8
Ligilactobacillus murinus
GCA_004793535.1ContigSRYK00000000SAMN10878296
NM26_J9
Ligilactobacillus murinus
GCA_004793875.1ContigSRYH00000000SAMN10878293
NM11_1-41
Limosilactobacillus reuteri
GCA_004794115.1ContigSRYI00000000SAMN10878294
NM12_1-47
Limosilactobacillus reuteri
GCA_004794085.1ContigSRYO00000000SAMN10878300
NM46_B2-13
Microbacterium laevaniformans
GCA_004801705.1ContigSSTK00000000SAMN11366398
NM77_A26
Muribaculaceae bacterium
GCA_004801635.1ContigSSTG00000000SAMN11366403
NM86_A22
Muribaculaceae bacterium
GCA_004792675.1ContigSRVL00000000SAMN10878316
NM75_1-48a
Muribaculum intestinale
GCA_004793655.1ContigSRYD00000000SAMN10878289
NM06_A21
Muribaculum intestinale
GCA_009856815.1ContigWVUM00000000SAMN10878286
NM03_1-53
Muribaculum intestinale
GCA_004793735.1ContigSRYY00000000SAMN10878310
NM65_B17
Muribaculum sp. NM65_B17
GCA_004793765.1ContigSRYM00000000SAMN10878298
NM39_I3
Parabacteroides distasonis
GCA_009767915.1ContigWSRP00000000SAMN11366400
NM82_D38
Parasutterella sp. NM82_D38
GCA_005046025.1ContigSSTM00000000SAMN11366395
NM48_B13
Parvibacter caecicola
GCA_004793515.1ContigSRYN00000000SAMN10878299
NM44_TS2-9
Pasteurella caecimuris
GCA_004793835.1ContigSRYJ00000000SAMN10878295
NM22_B1
Phocaeicola sartorii
GCA_004793845.1ContigSRYP00000000SAMN10878301
NM47_B9-13
Propionibacterium sp. NM47_B9-13
GCA_004801655.1ContigSSTI00000000SAMN11366401
NM83_B4-11
Sphingomonas olei
GCA_004794075.1ContigSRYW00000000SAMN10878308
NM62_B4-13
Stenotrophomonas maltophilia
GCA_009767945.1ContigWSRS00000000SAMN11366396
NM51_B2-22
Streptococcus danieliae
SRA Data Details
ParameterValue
Data volume, Gbases155
Data volume, Mbytes48818

Supplemental Content

Related information

LinkOut to external resources

Recent activity

Clear Turn Off Turn On
  • Bacteria
    Bacteria
    Genome sequencing and assembly - library of cultured bacterial species from laboratory mouse gut microbiota from the University of Toronto
    BioProject
  • Treponema pallidum subsp. pallidum str. Chicago
    Treponema pallidum subsp. pallidum str. Chicago
    Treponema pallidum subsp. pallidum str. Chicago genome sequencing
    BioProject
  • lake water metagenome
    lake water metagenome
    Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G14 metagenome
    BioProject
  • Homo sapiens
    Homo sapiens
    Isolation and sequencing of AGO-bound RNAs reveals characteristics of stem-loop processing in vivo
    BioProject
  • Pseudomonas aeruginosa
    Pseudomonas aeruginosa
    Pseudomonas aeruginosa Genome sequencing and assembly
    BioProject

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI
Support Center