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Accession: PRJNA474721 ID: 474721

RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq) (rice)

See Genome Information for Oryza sativa
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This project is a component of the RNA-seq and DNA methylomes of germinating rice and developing coleoptiles
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1 additional project is a component of the RNA-seq and DNA methylomes of germinating rice and developing coleoptiles.
5826 additional projects are related by organism.
RNAseq profiling of seeds and 7 time points during germination in rice under aerobic and anerobic conditions, as well as following re-oxygenation. More...
AccessionPRJNA474721; GEO: GSE115371
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismOryza sativa[Taxonomy ID: 4530]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
PublicationsNarsai R et al., "Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation.", Plant J, 2017 Feb;89(4):805-824
SubmissionRegistration date: 5-Jun-2018
La trobe University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments48
Publications
PubMed1
Other datasets
BioSample48
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes51
SRA Data Details
ParameterValue
Data volume, Gbases133
Data volume, Mbytes55744

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