This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA474486; GEO: GSE115291 |
| Type | Umbrella project |
| Publications | Wolf G et al., "KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage.", Elife, 2020 Jun 1;9 |
| Submission | Registration date: 4-Jun-2018
Macfarlan lab, NICHD, NIH |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 280 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 280 |
| GEO DataSets | 6 |
Retrotransposon reactivation and mobilization upon deletions of megabase-scale KRAB zinc finger gene clusters in mice encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 3 |
BioProject
accession | Organism | Title |
|---|
| PRJNA474488 | Mus musculus | Genome-wide binding patterns of murine KRAB zinc finger proteins (Macfarlan lab, NICHD, NIH) | | PRJNA474489 | Mus musculus | Genome-wide maps of chromatin state and KAP1 occupancy in KRAB zinc finger protein (KRAB-ZFP) gene cluster KO ES cells and testis (Macfarlan lab, NICHD, NIH) | | PRJNA474491 | Mus musculus | Genome-wide analysis of DNA methylation in KRAB-ZFP cluster KO ES cells (Macfarlan lab, NICHD, NIH) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA474487 | Mus musculus | Identification of novel ETn insertions in KRAB-ZFP cluster depleted mice (Macfarlan lab, NICHD, NIH) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA474490 | Mus musculus | Genome-wide analysis of differential transcription in KRAB-ZFP cluster knock-out ES cells and mouse tissues (Macfarlan lab, NICHD, NIH) |
|