See
Genome Information for Homo sapiens
With stringent filtering criteria (fold change>2, p<0.001 and False Discovery Rate (FDR) <0.01), we identified 133 lncRNAs and 370 mRNAs that were the most highly differentially expressed. Of all the lncRNAs, 61 were upregulated, and 72 were downregulated.
Overall design: Twenty one paired luminal breast tumor (ER+) and para-carcinoma RNA samples extracted from fresh frozen tissues were analyzed using the Affymetrix Human Transcriptome 2.0 Arrays. Array data was processed by Partak genomic suite software.
| Accession | PRJNA473920; GEO: GSE115144 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Sun W et al., "Transcriptome analysis of luminal breast cancer reveals a role for LOL in tumor progression and tamoxifen resistance.", Int J Cancer, 2019 Aug 1;145(3):842-856 |
| Submission | Registration date: 31-May-2018
Department of Breast Surgery, Fudan University Shanghai Cancer Center |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 2961966 |
| Data volume, Processed Mbytes | 71 |
| Data volume, Supplementary Mbytes | 972 |