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Accession: PRJNA473343 ID: 473343

Pelagibacterales bacterium

Single-cell genomics of the SAR11 clade

Single-cell genomics of the SAR11 clade, collected from the Mediterranean Sea (Blanes Bay Microbial Observatory, BBMO).
AccessionPRJNA473343
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Haro-Moreno JM et al., "Ecogenomics of the SAR11 clade.", Environ Microbiol, 2020 May;22(5):1748-1763
  • Martinez-Hernandez F et al., "Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean.", ISME J, 2019 Jan;13(1):232-236
SubmissionRegistration date: 28-May-2018
Evolutionary Genomics Group
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)46
SRA Experiments1
Publications
PubMed2
PMC2
Other datasets
BioSample47
Assembly46
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
46
46
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_014654455.1ContigJACWCY000000000SAMN15685163
SAG-MED01
Pelagibacterales bacterium SAG-MED01
GCA_014654485.1ContigJACWCZ000000000SAMN15685164
SAG-MED02
Pelagibacterales bacterium SAG-MED02
GCA_014654465.1ContigJACWDA000000000SAMN15685165
SAG-MED03
Pelagibacterales bacterium SAG-MED03
GCA_014654375.1ContigJACWDB000000000SAMN15685166
SAG-MED04
Pelagibacterales bacterium SAG-MED04
GCA_014654415.1ContigJACWDC000000000SAMN15685167
SAG-MED05
Pelagibacterales bacterium SAG-MED05
GCA_014654355.1ContigJACWDD000000000SAMN15685168
SAG-MED06
Pelagibacterales bacterium SAG-MED06
GCA_014654315.1ContigJACWDE000000000SAMN15685169
SAG-MED07
Pelagibacterales bacterium SAG-MED07
GCA_014654325.1ContigJACWDF000000000SAMN15685170
SAG-MED08
Pelagibacterales bacterium SAG-MED08
GCA_014654245.1ContigJACWDG000000000SAMN15685171
SAG-MED09
Pelagibacterales bacterium SAG-MED09
GCA_014654235.1ContigJACWDH000000000SAMN15685172
SAG-MED10
Pelagibacterales bacterium SAG-MED10
GCA_014654265.1ContigJACWDI000000000SAMN15685173
SAG-MED11
Pelagibacterales bacterium SAG-MED11
GCA_014654185.1ContigJACWDJ000000000SAMN15685174
SAG-MED12
Pelagibacterales bacterium SAG-MED12
GCA_014654165.1ContigJACWDK000000000SAMN15685175
SAG-MED13
Pelagibacterales bacterium SAG-MED13
GCA_014654145.1ContigJACWDL000000000SAMN15685176
SAG-MED14
Pelagibacterales bacterium SAG-MED14
GCA_014654065.1ContigJACWDM000000000SAMN15685177
SAG-MED15
Pelagibacterales bacterium SAG-MED15
GCA_014654125.1ContigJACWDN000000000SAMN15685178
SAG-MED16
Pelagibacterales bacterium SAG-MED16
GCA_014654115.1ContigJACWDO000000000SAMN15685179
SAG-MED17
Pelagibacterales bacterium SAG-MED17
GCA_014654055.1ContigJACWDP000000000SAMN15685180
SAG-MED18
Pelagibacterales bacterium SAG-MED18
GCA_014654035.1ContigJACWDQ000000000SAMN15685181
SAG-MED19
Pelagibacterales bacterium SAG-MED19
GCA_014653975.1ContigJACWDR000000000SAMN15685182
SAG-MED20
Pelagibacterales bacterium SAG-MED20
GCA_014653955.1ContigJACWDS000000000SAMN15685183
SAG-MED21
Pelagibacterales bacterium SAG-MED21
GCA_014653985.1ContigJACWDT000000000SAMN15685184
SAG-MED22
Pelagibacterales bacterium SAG-MED22
GCA_014653935.1ContigJACWDU000000000SAMN15685185
SAG-MED23
Pelagibacterales bacterium SAG-MED23
GCA_014653915.1ContigJACWDV000000000SAMN15685186
SAG-MED24
Pelagibacterales bacterium SAG-MED24
GCA_014653865.1ContigJACWDW000000000SAMN15685187
SAG-MED25
Pelagibacterales bacterium SAG-MED25
GCA_014653845.1ContigJACWDX000000000SAMN15685188
SAG-MED27
Pelagibacterales bacterium SAG-MED27
GCA_014653835.1ContigJACWDY000000000SAMN15685189
SAG-MED28
Pelagibacterales bacterium SAG-MED28
GCA_014653815.1ContigJACWDZ000000000SAMN15685190
SAG-MED29
Pelagibacterales bacterium SAG-MED29
GCA_014653775.1ContigJACWEA000000000SAMN15685191
SAG-MED30
Pelagibacterales bacterium SAG-MED30
GCA_014653715.1ContigJACWEB000000000SAMN15685192
SAG-MED31
Pelagibacterales bacterium SAG-MED31
GCA_014653725.1ContigJACWEC000000000SAMN15685193
SAG-MED32
Pelagibacterales bacterium SAG-MED32
GCA_014653735.1ContigJACWED000000000SAMN15685194
SAG-MED33
Pelagibacterales bacterium SAG-MED33
GCA_014653665.1ContigJACWEE000000000SAMN15685195
SAG-MED34
Pelagibacterales bacterium SAG-MED34
GCA_014653655.1ContigJACWEF000000000SAMN15685196
SAG-MED35
Pelagibacterales bacterium SAG-MED35
GCA_014653605.1ContigJACWEG000000000SAMN15685197
SAG-MED37
Pelagibacterales bacterium SAG-MED37
GCA_014653585.1ContigJACWEH000000000SAMN15685198
SAG-MED38
Pelagibacterales bacterium SAG-MED38
GCA_014653625.1ContigJACWEI000000000SAMN15685199
SAG-MED39
Pelagibacterales bacterium SAG-MED39
GCA_014653545.1ContigJACWEJ000000000SAMN15685200
SAG-MED41
Pelagibacterales bacterium SAG-MED41
GCA_014653535.1ContigJACWEK000000000SAMN15685201
SAG-MED43
Pelagibacterales bacterium SAG-MED43
GCA_014653495.1ContigJACWEL000000000SAMN15685202
SAG-MED44
Pelagibacterales bacterium SAG-MED44
GCA_014653465.1ContigJACWEM000000000SAMN15685203
SAG-MED45
Pelagibacterales bacterium SAG-MED45
GCA_014653455.1ContigJACWEN000000000SAMN15685204
SAG-MED46
Pelagibacterales bacterium SAG-MED46
GCA_014653355.1ContigJACWEO000000000SAMN15685205
SAG-MED47
Pelagibacterales bacterium SAG-MED47
GCA_014653375.1ContigJACWEP000000000SAMN15685206
SAG-MED48
Pelagibacterales bacterium SAG-MED48
GCA_014653365.1ContigJACWEQ000000000SAMN15685207
SAG-MED49
Pelagibacterales bacterium SAG-MED49
GCA_014653385.1ContigJACWER000000000SAMN15685208
SAG-MED50
Pelagibacterales bacterium SAG-MED50
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes681

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