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Accession: PRJNA473317 ID: 473317

The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation (thale cress)

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5934 additional projects are related by organism.
we performed Hi-C to probe the nuclear organization patterns after genome duplication in Arabidopsis, In connection with RNA-Seq data and ChIP-Seq data, we found that the transcription of a group of genes is specifically affected by the chromatin interactions with epigenome dynamics. More...
AccessionPRJNA473317; GEO: GSE114950
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsZhang H et al., "The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation.", Nucleic Acids Res, 2019 Sep 5;47(15):7857-7869
SubmissionRegistration date: 25-May-2018
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RelevanceModel Organism
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Resource NameNumber
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Sequence data
SRA Experiments28
Publications
PubMed1
PMC1
Other datasets
BioSample28
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes70
SRA Data Details
ParameterValue
Data volume, Gbases323
Data volume, Tbytes0.12

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