Assuming that functional lncRNAs form larger ribonucleoprotein complex and thus are easily crosslinked to proteins upon UV-irradiation, we performed RNA-Seq analyses of RNAs recovered from the aqueous phase after the UV-irradiation and phenol chloroform extraction (UPA-Seq)
Overall design: Examination of expression profiles of UV-irradiated and non-irradiated cells (HepG2, HEK293, Neuro2a, HippCulture).
| Accession | PRJNA472627; GEO: GSE114789 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multispecies |
| Publications | Komatsu T et al., "UPA-seq: prediction of functional lncRNAs using differential sensitivity to UV crosslinking.", RNA, 2018 Dec;24(12):1785-1802 |
| Submission | Registration date: 22-May-2018
RNA Biology Laboratory, Faculty of Pharmaceutical Sciences, Hokkaido University |
| Relevance | Unknown |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 24 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 24 |
| GEO DataSets | 1 |