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3 additional projects are components of the Discovery and annotation of intracellular and extracellular orphan non-coding RNAs in breast cancer.
We performed small RNA sequencing in breast cancer cells treated with siRNA for Control, DCGR8, DROSHA, TARBP2, DICER
Overall design: We used the NEXTflex Small RNA Sequencing Kit v3 (Biooscientific) per the manufacturer's protocol: small RNA samples were extracted using microRNA Purification Kit (Norgen) and subjected to library preparation.
| Accession | PRJNA472600; GEO: GSE114773 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Fish L et al., "Cancer cells exploit an orphan RNA to drive metastatic progression.", Nat Med, 2018 Nov;24(11):1743-1751 |
| Submission | Registration date: 22-May-2018
Columbia University |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 9 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 9 |
| GEO DataSets | 1 |