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Genome Information for Homo sapiens
Diabetes-related hearing loss (DRHL) is a complication of diabetes mellitus which is drawing more attention currently. DNA methylation plays a critical role in the pathogenesis of type 2 diabetes mellitus (T2DM) and its complications. Therefore we investigated the genome-wide DNA methylation of peripheral blood of T2DM patients with/without hearing loss in order to explore the susceptibility loci of DRHL.
Between DRHL group and control group, 249 CpG sites were identified to be differentially methylated regions (DMRs). Among 39 DMRs with whole samples, the classification accuracy is up to 90.0%. With alignment to T2DM susceptibility genes and deafness genes published, KCNJ11 was found to be the only overlapped gene. The DNA methylation level of KCNJ11 was associated with stroke (t=2.595, p<0.05), but not with diabetic nephropathy and diabetic retinopathy. The detective rate of distortion product otoacoustic emissions (DPOAE) from low to high frequencies (0.7~6 kHz) on the right ear was significantly correlated with the methylation level of KCNJ11. The auditory brainstem response (ABR) threshold on the right ear was also correlated (r=0.678, p<0.05). This DNA methylation profile indicates the susceptibility loci of DRHL. The potassium metabolism may play a critical role in the hearing loss caused by hyperglycemia.
| Accession | PRJNA472487 |
| Data Type | Raw sequence reads, Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Submission | Registration date: 22-May-2018
Beijing Tongren Hospital |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 10 |
| Other datasets |
| BioSample | 10 |