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Accession: PRJNA472011 ID: 472011

Transcriptome response to the Deepwater Horizon oil spill identifies novel candidate genes for oil tolerance in natural populations of the foundation plant Spartina alterniflora (smooth cordgrass)

See Genome Information for Sporobolus alterniflorus
Genome-wide expression assay of S. alterniflora individuals from populations (4 from Louisiana, 2 from Mississippi) either exposed or unexposed to the Deepwater Horizon oil spill Overall design: 9 individuals at each populations were pooled randomly into 3 replicate RNA pools per population, then converted to cDNA and hybridized to a custom 1-color 4x44k Agilent microarray
AccessionPRJNA472011; GEO: GSE114635
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismSporobolus alterniflorus[Taxonomy ID: 29706]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Sporobolinae; Sporobolus; Sporobolus alterniflorus
SubmissionRegistration date: 18-May-2018
Donohue, Biology, Duke University
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots306882
Data volume, Processed Mbytes10
Data volume, Supplementary Mbytes114

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