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Accession: PRJNA471260 ID: 471260

Functional annotation of transcriptional factors transactivation domains (fruit fly)

See Genome Information for Drosophila melanogaster
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3158 additional projects are related by organism.
The goal of this study is to identify transactivation domains within transcription factor body with high-throughput NGS sequencing methods Overall design: Examination of transcription factor's trans-activation domain activity between GFP+ and GFP- cells Please note that raw reads from each replicates (*rep1*_R1* , *rep1*_R2*) and (*rep2*_R1*, *rep2*_R2*) were mapped independently into custom genome (TFbb_list180_linear*). More...
AccessionPRJNA471260; GEO: GSE114387
ScopeMultiisolate
OrganismDrosophila melanogaster[Taxonomy ID: 7227]
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora; Drosophila melanogaster
PublicationsArnold CD et al., "A high-throughput method to identify trans-activation domains within transcription factor sequences.", EMBO J, 2018 Aug 15;37(16)
SubmissionRegistration date: 14-May-2018
Stark Lab, The Research Institute of Molecular Pathology (IMP)
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments8
Publications
PubMed1
PMC1
Other datasets
BioSample8
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes11
SRA Data Details
ParameterValue
Data volume, Gbases6
Data volume, Mbytes3724

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