This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA467365; GEO: GSE114176 |
| Type | Umbrella project |
| Publications | - Srivastava D et al., "An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding.", Genome Biol, 2021 Jan 7;22(1):20
- Aydin B et al., "Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.", Nat Neurosci, 2019 Jun;22(6):897-908
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| Submission | Registration date: 8-May-2018
Shaun Mahony, Biochemistry & Molecular Biology, Penn State University |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 66 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 66 |
| GEO DataSets | 5 |
Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA467527 | Mus musculus | Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (ChIP-seq) (Shaun Mahony, Biochemistry...) | | PRJNA467528 | Mus musculus | Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (ATAC-seq) (Shaun Mahony, Biochemistry...) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA467529 | Mus musculus | Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (RNA-seq) (Shaun Mahony, Biochemistry...) | | PRJNA516927 | Mus musculus | Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (single-cell RNA-seq) (Shaun Mahony, Biochemistry...) |
|