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Accession: PRJNA46305 ID: 46305

Human Microbiome Project (HMP) Demonstration Projects

The human microbiome and human health and disease

HMP demonstration projects were developed to investigate the potential relationship of changes in the human microbiota to human health and disease. High throughput genomics technologies were used to assess whether the microbiota in a specific region on/in the human body plays a role in contributing to health status.
AccessionPRJNA46305
TypeUmbrella project (Subtype:Funding initiative)
SubmissionRegistration date: 3-Mar-2010
NIH Human Microbiome Consortium
NCBI Links
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)297430
WGS master4
Genomic DNA297332
SRA Experiments21507
Capillary Traces (Trace Archive)1
Protein Sequences5543
Publications
PubMed6
PMC6
Other datasets
BioSample20919
Genotype and Phenotype (dbGaP)15
Assembly5
SRA Data Details
ParameterValue
Data volume, Gbases8,355
Data volume, Tbytes5.32
Human Microbiome Project (HMP) Demonstration Projects encompasses the following 21 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes

1
BioProject
accession
Assembly
level
OrganismTitle
PRJNA46877 Chromosomeshuman vaginal metagenomeThe Vaginal Microbiome: Disease, Genetics and the Environment (Virginia Commonwealth University)
Phenotype or Genotype18
BioProject
accession
OrganismTitle
PRJNA46307human metagenomeForegut microbiome in development of esophageal adenocarcinoma (New York University School...)
PRJNA46309human metagenomeEvaluation of the cutaneous microbiome in psoriasis (New York University School...)
PRJNA46311human metagenomeThe Vaginal Microbiome: Disease, Genetics and the Environment (Virginia Commonwealth University)
PRJNA46313human metagenomeDiet, Genetic Factors, and the Gut Microbiome in Crohn's Disease (University of Pennsylvania)
PRJNA46315human metagenomeThe Role of the Gut Microbiota in Ulcerative Colitis, targeted gene survey (University of Michigan at...)
List all 18 'Phenotype or Genotype' projects...
targeted loci2
BioProject
accession
OrganismTitle
PRJNA174514human gut metagenome16S Sequencing of Human Gut Microbiome in Crohn's Disease Metagenome (University of Maryland Institute...)
PRJNA288581human gut metagenomeEffect of Crohn's Disease Risk Alleles on Enteric Microbiota set 2 (Stony Brook University)

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