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Accession: PRJDA46243 ID: 46243

soil metagenome

Metatranscriptomic Analysis for Eukaryotic Functional Genes in Forest Soil

For the extraction of environmental RNA after enrichment with wheat bran and avicel, the sample was collected from the forest humic soil in the site of AIST. More...
AccessionPRJDA46243
Data TypeTranscriptome or Gene expression
ScopeEnvironment
Organismsoil metagenome[Taxonomy ID: 410658]
unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
PublicationsTakasaki K et al., "Discovery of glycoside hydrolase enzymes in an avicel-adapted forest soil fungal community by a metatranscriptomic approach.", PLoS One, 2013;8(2):e55485
SubmissionRegistration date: 25-Feb-2010
National Institute of Advanced Industrial Science and Technology (AIST)
Locus Tag PrefixE1G
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Transcript)56084
SRA Experiments1
Publications
PubMed1
PMC1
Other datasets
BioSample1
SRA Data Details
ParameterValue
Data volume, Mbases50
Data volume, Mbytes100

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