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Accession: PRJNA43021 ID: 43021

NIH Human Microbiome Project (HMP) Roadmap Project

The human microbiome refers to the community of microorganism that live in or on the human body. The Human Microbiome Project (HMP) is an NIH Roadmap project that was initiated to generate resources to enable comprehensive characterization of the human microbiota and analysis of its role in human health and disease. The HMP centers will sequence the genomes of a set of microoganisms that have been previously isolated from the human body. In addition, samples from the digestive tract, mouth, skin, nose, and female urogenital tract of human volunteers will be sequenced for 16S ribosomal RNA analysis and considered for metagenomic analysis.
TypeUmbrella project (Subtype:Funding initiative)
PublicationsNIH HMP Working Group et al., "The NIH Human Microbiome Project.", Genome Res, 2009 Oct 9;19(12):2317-23
SubmissionRegistration date: 2-Jan-2010
NIH Human Microbiome Consortium
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Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)594364
WGS master2098
Genomic DNA297540
SRA Experiments14371
Capillary Traces (Trace Archive)1
Protein Sequences5938396
Other datasets
Genotype and Phenotype (dbGaP)16
SRA Data Details
Data volume, Gbases32,161
Data volume, Tbytes30.93
NIH Human Microbiome Project (HMP) Roadmap Project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Umbrella project4
PRJNA48489Human Microbiome Project (HMP) 16S rRNA Gene DiversityExamining the diversity of 16S ribosomal RNA genes in the human microbiome for the Human Microbiome Project (HMP) (NIH Human Microbiome Consortium)
PRJNA46305Human Microbiome Project (HMP) Demonstration ProjectsThe human microbiome and human health and disease (NIH Human Microbiome Consortium)
PRJNA43017Human Microbiome Project (HMP) Metagenome ProjectsDeeper shotgun sequencing of human microbiome samples for the Human Microbiome Project (HMP) (NIH Human Microbiome Consortium)
PRJNA28331Human Microbiome Project (HMP) Reference GenomesGenomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP) (NIH Human Microbiome Consortium)

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