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Accession: PRJNA43017 ID: 43017

Human Microbiome Project (HMP) Metagenome Projects

Deeper shotgun sequencing of human microbiome samples for the Human Microbiome Project (HMP)

Expanding on the 16S rRNA data obtained in another component of the Human Microbiome Project (HMP), whole genome shotgun (WGS) sequencing will be performed on samples taken from the digestive tract, mouth, skin, nose, and female urogenital tract of human subjects to gain insight into the genes and pathways present in the human microbiome.
AccessionPRJNA43017
TypeUmbrella project (Subtype:Funding initiative)
SubmissionRegistration date: 4-Jan-2010
NIH Human Microbiome Consortium
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Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3528
Other datasets
BioSample55767
Genotype and Phenotype (dbGaP)1
SRA Data Details
ParameterValue
Data volume, Gbases22,849
Data volume, Tbytes24.60
Human Microbiome Project (HMP) Metagenome Projects encompasses the following 3 sub-projects:
Project TypeNumber of Projects
Phenotype or Genotype3
BioProject
accession
OrganismTitle
PRJNA48475human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Mock Pilot (NIH Human Microbiome Consortium)
PRJNA48477human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Clinical Pilot (NIH Human Microbiome Consortium)
PRJNA48479human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase (NIH Human Microbiome Consortium)

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