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Accession: PRJNA344664 ID: 344664

Homo sapiens (human)

The methylome of Alu repeats in colon cancer (RNA-Seq)

See Genome Information for Homo sapiens
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This project is a component of the The methylome of Alu repeats in colon cancer
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2 additional projects are components of the The methylome of Alu repeats in colon cancer.
66644 additional projects are related by organism.
Poly-A messenger RNA data for the NSUMA-based assessment of Alu repeats methylation status in colorectal cancer Overall design: Two replicates of cell lines
AccessionPRJNA344664; GEO: GSE87400
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsJordà M et al., "The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.", Genome Res, 2017 Jan;27(1):118-132
SubmissionRegistration date: 27-Sep-2016
IGTP
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments2
Publications
PubMed1
PMC1
Other datasets
BioSample2
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes192
SRA Data Details
ParameterValue
Data volume, Gbases37
Data volume, Mbytes25239

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