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Accession: PRJNA344451 ID: 344451

Arabidopsis thaliana (thale cress)

RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]

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This project is a component of the Direct transcriptional integration of phosphate starvation and disease resistance in response to a root microbiome
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2 additional projects are components of the Direct transcriptional integration of phosphate starvation and disease resistance in response to a root microbiome.
5935 additional projects are related by organism.
This study evaluates the transcriptome of Arabidopsis thaliana seedlings growing in the presence of a 35-member bacterial SynCom under different phosphate availability Overall design: Arabidopsis seeds (wild-type Col-0 and the mutants phr1 and phr1 phl1) were germinated on Johnson medium containing 0. More...
AccessionPRJNA344451; GEO: GSE87338
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsCastrillo G et al., "Root microbiota drive direct integration of phosphate stress and immunity.", Nature, 2017 Mar 23;543(7646):513-518
SubmissionRegistration date: 26-Sep-2016
Dangl lab, Biology, University of North Carolina at Chapel Hill
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Sequence data
SRA Experiments104
Publications
PubMed1
PMC1
Other datasets
BioSample104
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases28
Data volume, Mbytes13765

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