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Accession: PRJNA344441 ID: 344441

Arabidopsis thaliana (thale cress)

Small RNA-seq of ago4 null and slicing-defective mutant in Arabidopsis

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To investigate the effect of AGO4 upon small RNA accumulation in Arabidopsis, we analyzed small RNA accumulation in ago4, ago4/ago6/ago9 triple mutant, stable transgenic lines expressing wild-type AGO4 and slicing-defective AGO4 in ago4 and ago4/ago6/ago9 background. More...
AccessionPRJNA344441; GEO: GSE87333
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsWang F et al., "AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci in Arabidopsis thaliana.", Plant J, 2017 Apr;90(1):37-47
SubmissionRegistration date: 26-Sep-2016
Axtell, Department of Biology, The Pennsylvania State University
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RelevanceModel Organism
Project Data:
Resource NameNumber
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Sequence data
SRA Experiments21
Publications
PubMed1
Other datasets
BioSample21
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes426
SRA Data Details
ParameterValue
Data volume, Gbases7
Data volume, Mbytes10356

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