Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA343107 ID: 343107

Homo sapiens (human)

Analysis of splicing pattern and gene expression level of Matrin3 knockdown.

See Genome Information for Homo sapiens
Navigate Across
66644 additional projects are related by organism.
We identified RNA targets of Matrin3 using SH-SY5Y by PAR-CLIP analysis. Because Matrin3 mainly bound to intron of pre-mRNA, in order to find the effect of Matrin3 on splicing pattern and expression, we knocked down Matrin3 using SH-SY5Y cells by electroporation and extracted total RNAs from those cells. More...
AccessionPRJNA343107; GEO: GSE86967
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsUemura Y et al., "Matrin3 binds directly to intronic pyrimidine-rich sequences and controls alternative splicing.", Genes Cells, 2017 Sep;22(9):785-798
SubmissionRegistration date: 15-Sep-2016
Laboratory of RNA Function, Graduate School of Medicine, Osaka University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Publications
PubMed1
Other datasets
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots5910648
Data volume, Processed Mbytes126
Data volume, Supplementary Mbytes296

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI
Support Center