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Genome Information for Oryza sativa
To explore the molecular mechanism that confers the ability to regenerate on certain tissues in rice, we performed an RNA-seq experiment during callus formation from the basal part of young leaf explants about 7 mm in length.The 1727 genes are significantly highly upregulated in 2 DAC and 1839 genes in 5 DAC on Callus Induced Medium as compared to that of 0 DAC based on the following criteria: fc>10 and P value <0.05.
Overall design: Total RNA obtained from the base region（2 mm) of 7 mm rice leaf explants at time 0, 2 DAC and 5 DAC on Callus Induced Medium.
| Accession | PRJNA342808; GEO: GSE86869 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Oryza sativa Japonica Group[Taxonomy ID: 39947] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group |
| Publications | Hu B et al., "Divergent regeneration-competent cells adopt a common mechanism for callus initiation in angiosperms.", Regeneration (Oxf), 2017 Jun;4(3):132-139 |
| Submission | Registration date: 13-Sep-2016
Chinese Academy of Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 3 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 3 |
| GEO DataSets | 1 |