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Accession: PRJNA341832 ID: 341832

Corynebacterium diphtheriae and Corynebacterium ulcerans Genome sequencing and assembly

Diphtheria outbreak isolates from South Africa
AccessionPRJNA341832
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publicationsdu Plessis M et al., "Molecular Characterization of Corynebacterium diphtheriae Outbreak Isolates, South Africa, March-June 2015.", Emerg Infect Dis, 2017 Aug;23(8):1308-1315
SubmissionRegistration date: 5-Sep-2016
National Institute for Communicable Diseases
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2061
WGS master28
Protein Sequences59579
Publications
PubMed1
PMC1
Other datasets
BioSample28
Assembly28
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
21
7
28
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001876335.1ContigMIOQ00000000SAMN05729436
ST378-KZN-2016-48347
Corynebacterium diphtheriae
GCA_001876295.1ScaffoldMIOR00000000SAMN05729437
ST378-KZN-2016-48412
Corynebacterium diphtheriae
GCA_001876285.1ScaffoldMIOP00000000SAMN05729435
ST402-SA-1980-2337
Corynebacterium diphtheriae
GCA_001876245.1ScaffoldMIYP00000000SAMN05729429
ST378-KZN-2015-45902
Corynebacterium diphtheriae
GCA_001876255.1ScaffoldMIOO00000000SAMN05729434
ST395-SA-1980-6853
Corynebacterium diphtheriae
GCA_001876215.1ScaffoldMIYS00000000SAMN05729433
ST291-CPT-2015-46403
Corynebacterium diphtheriae
GCA_001876195.1ContigMIYR00000000SAMN05729432
ST390-CPT-2015-46337
Corynebacterium diphtheriae
GCA_001876175.1ScaffoldMION00000000SAMN05729431
ST395-KZN-2015-45784
Corynebacterium diphtheriae
GCA_001876165.1ScaffoldMIYQ00000000SAMN05729430
ST378-KZN-2015-45903
Corynebacterium diphtheriae
GCA_001876145.1ScaffoldMIYO00000000SAMN05729412
ST378-KZN-2015-45462
Corynebacterium diphtheriae
GCA_001876115.1ScaffoldMIOM00000000SAMN05729428
ST378-KZN-2015-45788
Corynebacterium diphtheriae
GCA_001876095.1ScaffoldMIOL00000000SAMN05729427
ST378-KZN-2015-45787
Corynebacterium diphtheriae
GCA_001876085.1ContigMIOI00000000SAMN05729425
ST378-KZN-2015-45466
Corynebacterium diphtheriae
GCA_001876055.1ContigMIOF00000000SAMN05729421
ST378-KZN-2015-45238
Corynebacterium diphtheriae
GCA_001876035.1ScaffoldMIOE00000000SAMN05729420
ST395-KZN-2015-45237
Corynebacterium diphtheriae
GCA_001876025.1ScaffoldMIOD00000000SAMN05729419
ST378-KZN-2015-45236
Corynebacterium diphtheriae
GCA_001876005.1ScaffoldMIOC00000000SAMN05729418
ST395-KZN-2015-45262
Corynebacterium diphtheriae
GCA_001875975.1ScaffoldMIOK00000000SAMN05729426
ST378-KZN-2015-45785
Corynebacterium diphtheriae
GCA_001875965.1ScaffoldMIOJ00000000SAMN05729413
ST378-KZN-2015-45786
Corynebacterium diphtheriae
GCA_001875945.1ContigMIOH00000000SAMN05729424
ST378-KZN-2015-45465
Corynebacterium diphtheriae
GCA_001875925.1ScaffoldMIOG00000000SAMN05729423
ST378-KZN-2015-45464
Corynebacterium diphtheriae
GCA_001875905.1ScaffoldMIYN00000000SAMN05729422
ST378-KZN-2015-45463
Corynebacterium diphtheriae
GCA_001875875.1ScaffoldMIOB00000000SAMN05729417
ST395-KZN-2015-45792
Corynebacterium diphtheriae
GCA_001875855.1ScaffoldMINZ00000000SAMN05729415
ST378-KZN-2015-45790
Corynebacterium diphtheriae
GCA_001875845.1ContigMINX00000000SAMN05729411
ST378-KZN-2015-45461
Corynebacterium diphtheriae
GCA_001875815.1ScaffoldMINY00000000SAMN05729414
ST378-KZN-2015-45789
Corynebacterium diphtheriae
GCA_001875805.1ScaffoldMIOA00000000SAMN05729416
ST378-KZN-2015-45791
Corynebacterium diphtheriae
GCA_001876325.1ContigMIOS00000000SAMN05729438
KZN-2016-48390
Corynebacterium ulcerans

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