ID 341691 - BioProject

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Accession: PRJNA341691 ID: 341691

Swine-associated Intestinal microbiome data

Data associated with investigations into the swine-associated intestinal microbiome and its relationship to host health

Accession	PRJNA341691
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Trachsel J et al., "Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine.", Appl Environ Microbiol, 2016 Nov 15;82(22):6788-6798
Submission	Registration date: 2-Sep-2016 USDA-ARS
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	131
WGS master	8
SRA Experiments	12
Protein Sequences	20862
Publications
PubMed	1
PMC	1
Other datasets
BioSample	20
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

8
8

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001940315.1	MJIF00000000	SAMN05726913	494a	Anaerostipes sp. 494a
GCA_001940245.1	MJIG00000000	SAMN05726911	992a	Anaerostipes sp. 992a
GCA_002157465.1	NHOC00000000	SAMN06279795	BB10	Butyricicoccus porcorum
GCA_001940235.1	MJIE00000000	SAMN05726916	68-3-10	Hornefia porci
GCA_001940005.1	MJII00000000	SAMN05726918	27-5-10	Intestinimonas butyriciproducens
GCA_001940285.1	MJIH00000000	SAMN05726917	35-6-1	Peptoniphilus porci
GCA_001940225.1	MJID00000000	SAMN05726914	499	Roseburia sp. 499
GCA_001940165.1	MJHW00000000	SAMN05726915	831b	Roseburia sp. 831b

SRA Data Details

Parameter	Value
Data volume, Mbases	112
Data volume, Mbytes	67

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2884262208: Anaerostipes sp. 992a [Integrated Microbial Genomes]
2884262208: Anaerostipes sp. 992a
Integrated Microbial Genomes
2882308280: Butyricicoccus porcorum BB10 [Integrated Microbial Genomes]
2882308280: Butyricicoccus porcorum BB10
Integrated Microbial Genomes
2885037635: Eubacterium sp. 68-3-10 [Integrated Microbial Genomes]
2885037635: Eubacterium sp. 68-3-10
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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