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Accession: PRJNA341681 ID: 341681

Arabidopsis thaliana (thale cress)

A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (CPDs)

See Genome Information for Arabidopsis thaliana
This study reports that the DNA DAMAGE-BINDING PROTEIN 2 (DDB2) and ARGONAUTE 1 (AGO1) form a chromatin-bound complex, which facilitates recognition of photo-lesions. Overall design: Immunoprecipitation of photolesions (CPDs) after UV exposure
AccessionPRJNA341681; GEO: GSE86395
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsSchalk C et al., "Small RNA-mediated repair of UV-induced DNA lesions by the DNA DAMAGE-BINDING PROTEIN 2 and ARGONAUTE 1.", Proc Natl Acad Sci U S A, 2017 Apr 4;114(14):E2965-E2974
SubmissionRegistration date: 2-Sep-2016
IBMP-CNRS
NCBI Links
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments7
Publications
PubMed1
PMC1
Other datasets
BioSample7
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases4
Data volume, Mbytes2778

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