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1 additional project is a component of the Gene expression signatures to predict T cell responses to zoster vaccination.
To identify host factors that influence the immunogenicity of the attenuated VZV pOka vaccine strain and the efficacy of VZV vaccination, we immunized 39 individuals aged 50 to 75 years, including 9 monozygotic twin pairs. We measured VZV-specific T cell frequencies by IFN-γ–specific ELISpot, and VZV-specific antibody titers by ELISA. Whole gene expression arrays were performed on vaccinees before (n=28) and one (n=18) or three days (n=10) after vaccination. Cell-specific gene expression profiles were generated by deconvolution using previously described algorithms. Only very few neutrophil- and lymphocyte-related genes changed in expression from day 0 to 1. Significant changes for monocyte-related genes were found, but even here the number of probes with a significant change was low after adjusting for false discovery. When expression changes in monocyte-derived genes were analyzed for their correlation with T cell responses, we identified 493 probes corresponding to 479 genes that correlated with generation of VZV-specific effector T cells and 641 probes corresponding to 621 genes that correlated with the subsequent contraction phase with p<0.05. Interestingly, these two sets of genes were significantly overlapping, i.e., the same changes that were positively or negatively correlated with expansion inversely predicted contraction; their effects therefore cancelled out in determining net benefit in memory cell generation.
Overall design: We immunized 39 individuals aged 50 to 75 years with the life zoster vaccine Zostava, including 9 monozygotic twin pairs. We measured VZV-specific T cell frequencies by IFN-γ–specific ELISpot, and VZV-specific antibody titers by ELISA. Gene expression arrays were performed on whole blood of vaccinees before (n=28) and one (n=18) or three days (n=10) after vaccination. Gene expression was correlated with vaccination-induced changes in the frequencies of VZV-specific T cells.
| Accession | PRJNA341467; GEO: GSE86331 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Qi Q et al., "Defective T Memory Cell Differentiation after Varicella Zoster Vaccination in Older Individuals.", PLoS Pathog, 2016 Oct;12(10):e1005892 |
| Submission | Registration date: 1-Sep-2016 Medicine, Stanford University |
| Relevance | Medical |
Project Data:
| Resource Name | Number of Links |
|---|
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 2650088 |
| Data volume, Processed Mbytes | 57 |
| Data volume, Supplementary Mbytes | 78 |