Bacterial WGS validation panel (ID 341407) - BioProject

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Accession: PRJNA341407 ID: 341407

Bacterial WGS validation panel

The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting species, 9 Mycobacterium tuberculosis, and 5 miscellaneous bacteria. More...

Accession	PRJNA341407
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 31-Aug-2016 California Department of Public Health
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4884
WGS master	34
SRA Experiments	171
Protein Sequences	133538
Other datasets
BioSample	35
Assembly	34

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

28
6
34

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001997285.1	MTGG00000000	SAMN05721782	ATCC 17945	Acinetobacter baumannii
GCA_001999685.1	MTGJ00000000	SAMN05721785	ATCC 7966	Aeromonas hydrophila
GCA_001997325.1	MTGH00000000	SAMN05721783	ATCC 25285	Bacteroides fragilis
GCA_001999385.1	MTGK00000000	SAMN05721786	ATCC 43734	Corynebacterium jeikeium
GCA_001997105.1	MTFV00000000	SAMN05721771	ATCC 13047	Enterobacter cloacae
GCA_001999625.1	MTFY00000000	SAMN05721774	ATCC 29212	Enterococcus faecalis ATCC 29212
GCA_001997405.1	MTGM00000000	SAMN05721788	CDPH_C72	Escherichia coli
GCA_001997075.1	MTFU00000000	SAMN05721770	ATCC 25922	Escherichia coli
GCA_001997065.1	MTFT00000000	SAMN05721769	ATCC 8739	Escherichia coli
GCA_001997045.1	MTFS00000000	SAMN05721768	EDL 933	Escherichia coli
GCA_001997355.1	MTGI00000000	SAMN05721784	ATCC 10211	Haemophilus influenzae
GCA_001997245.1	MTGE00000000	SAMN05721780	ATCC 43290	Legionella pneumophila subsp. pneumophila ATCC 43290
GCA_001997265.1	MTGF00000000	SAMN05721781	CDPH_C53	Moraxella catarrhalis
GCA_001999445.1	MTGX00000000	SAMN05721799	CDPH_C67	Mycobacterium tuberculosis
GCA_001997915.1	MTGZ00000000	SAMN05721801	CDPH_C69	Mycobacterium tuberculosis
GCA_001997905.1	MTGY00000000	SAMN05721800	CDPH_C68	Mycobacterium tuberculosis
GCA_001997855.1	MTGR00000000	SAMN05721793	CDPH_C56	Mycobacterium tuberculosis
GCA_001998065.1	MTGS00000000	SAMN05721794	CDPH_C57	Mycobacterium tuberculosis
GCA_001997825.1	MTGW00000000	SAMN05721798	CDPH_C65	Mycobacterium tuberculosis
GCA_001997765.1	MTGV00000000	SAMN05721797	CDPH_C61	Mycobacterium tuberculosis
GCA_001997745.1	MTGU00000000	SAMN05721796	CDPH_C59	Mycobacterium tuberculosis
GCA_001997685.1	MTGT00000000	SAMN05721795	CDPH_C58	Mycobacterium tuberculosis
GCA_001997645.1	MTGL00000000	SAMN05721787	ATCC 49226	Neisseria gonorrhoeae
GCA_001997195.1	MTGC00000000	SAMN05721778	ATCC 27853	Pseudomonas aeruginosa
GCA_001997115.1	MTFW00000000	SAMN05721772	ATCC 14028	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_001997445.1	MTGN00000000	SAMN05721789	CDPH_C73	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_001997485.1	MTGO00000000	SAMN05721790	CDPH_C74	Salmonella enterica subsp. enterica serovar Infantis
GCA_001997835.1	MTGQ00000000	SAMN05721792	CDPH_C76	Salmonella enterica subsp. enterica serovar Worthington
GCA_001999405.1	MTGP00000000	SAMN05721791	CDPH_C75	Salmonella enterica subsp. enterica serovar Adelaide
GCA_001997145.1	MTFX00000000	SAMN05721773	ATCC 25923	Staphylococcus aureus
GCA_001999745.1	MTFZ00000000	SAMN05721775	ATCC 12228	Staphylococcus epidermidis
GCA_001997165.1	MTGA00000000	SAMN05721776	ATCC 15305	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292
GCA_001997185.1	MTGD00000000	SAMN05721779	ATCC 13637	Stenotrophomonas maltophilia
GCA_001999365.1	MTGB00000000	SAMN05721777	ATCC 6305	Streptococcus pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	117
Data volume, Mbytes	75635

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