This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA341319; GEO: GSE86260 |
| Type | Umbrella project |
| Publications | - Lam D et al., "Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels.", Clin Epigenetics, 2020 Jun 22;12(1):90
- Pidsley R et al., "Enduring epigenetic landmarks define the cancer microenvironment.", Genome Res, 2018 May;28(5):625-638
|
| Submission | Registration date: 31-Aug-2016
Garvan Institute of Medical Research |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 16 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 16 |
| GEO DataSets | 6 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 7114226 |
| Data volume, Processed Mbytes | 158 |
| Data volume, Supplementary Mbytes | 933 |
| Parameter | Value |
|---|
| Data volume, Gbases | 304 |
| Data volume, Tbytes | 0.15 |
Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA341327 | Homo sapiens | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [Illumina HM450] (Garvan Institute of Medical...) | | PRJNA338951 | Homo sapiens | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] (Garvan Institute of Medical...) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA338944 | Homo sapiens | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [RNA-seq] (Garvan Institute of Medical...) | | PRJNA341302 | Homo sapiens | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [HuGene-1_0-st] (Garvan Institute of Medical...) |
|
| Variation | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA338940 | Homo sapiens | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [Illumina_Omini 2.5-8_SNP] (Garvan Institute of Medical...) |
|