This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA340955; GEO: GSE86222 |
| Type | Umbrella project |
| Publications | Andrysik Z et al., "Identification of a core TP53 transcriptional program with highly distributed tumor suppressive activity.", Genome Res, 2017 Oct;27(10):1645-1657 |
| Submission | Registration date: 30-Aug-2016
Espinosa Lab, Pharmacology, University of Colorado Anschutz Medical Center |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 61 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 61 |
| GEO DataSets | 6 |
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA340392 | Homo sapiens | p53 ChIP-seq in Nutlin-treated HCT116, MCF7, and SJSA cell lines (Espinosa Lab, Pharmacology,...) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA340953 | Homo sapiens | shRNA screens for mediators of anti-proliferative effects of p53 in SJSA cell line (Espinosa Lab, Pharmacology,...) |
|
| Transcriptome or Gene expression | 3 |
BioProject
accession | Organism | Title |
|---|
| PRJNA340956 | Homo sapiens | Total RNA-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin (Espinosa Lab, Pharmacology,...) | | PRJNA340954 | Homo sapiens | RNAseq from polysomal RNA harvested from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin (Espinosa Lab, Pharmacology,...) | | PRJNA340395 | Homo sapiens | GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin (Espinosa Lab, Pharmacology,...) |
|