This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA339790; GEO: GSE85942 |
| Type | Umbrella project |
| Publications | Turcan S et al., "Mutant-IDH1-dependent chromatin state reprogramming, reversibility, and persistence.", Nat Genet, 2018 Jan;50(1):62-72 |
| Submission | Registration date: 23-Aug-2016
Chan Lab, HOPP, MSKCC |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 144 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 144 |
| GEO DataSets | 5 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 15108524 |
| Data volume, Processed Mbytes | 331 |
| Data volume, Supplementary Mbytes | 360 |
| Parameter | Value |
|---|
| Data volume, Gbases | 600 |
| Data volume, Tbytes | 0.33 |
Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA339797 | Homo sapiens | Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [methylation] (Chan Lab, HOPP, MSKCC) | | PRJNA339798 | Homo sapiens | Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [ChIP-seq] (Chan Lab, HOPP, MSKCC) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA339796 | Homo sapiens | Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [expression microarray] (Chan Lab, HOPP, MSKCC) | | PRJNA339799 | Homo sapiens | Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [RNA-seq] (Chan Lab, HOPP, MSKCC) |
|