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Accession: PRJNA339549 ID: 339549

Homo sapiens (human)

Individual-nucleotide resolution CLIP and high-throughput sequencing for FOX2, TDP43 and hnRNP M in WT and P-KO H9 cells

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Individual-nucleotide resolution UV-crosslinking and immunoprecipitation (iCLIP) combined with high-throughput sequencing was used to generate a transcriptome-wide binding map of TDP43, FOX2 and hnRNP M in WT and P-KO H9 cells. More...
AccessionPRJNA339549; GEO: GSE85851
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsWu H et al., "Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins.", Mol Cell, 2016 Nov 3;64(3):534-548
SubmissionRegistration date: 19-Aug-2016
CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments12
Publications
PubMed1
Other datasets
BioSample12
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes11
SRA Data Details
ParameterValue
Data volume, Gbases22
Data volume, Mbytes8076

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