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Accession: PRJNA339415 ID: 339415

Vibrio cholerae

Vibrio cholerae Genome sequencing and assembly

Water-borne Vibrio cholerae bacteria can cause fatal cholera diarrhea. We report whole genome, ultra-deep sequencing of 24 non-clinical isolates from diverse locales, which may reveal diverse natural transformation and Type VI Secretion genes promoting fitness, pathogenicity, and exchange between bacteria.
AccessionPRJNA339415
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismVibrio cholerae[Taxonomy ID: 666]
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
PublicationsBernardy EE et al., "Diversity of Clinical and Environmental Isolates of Vibrio cholerae in Natural Transformation and Contact-Dependent Bacterial Killing Indicative of Type VI Secretion System Activity.", Appl Environ Microbiol, 2016 May;82(9):2833-2842
Grants
  • "The regulation of natural transformation in Vibrio" (Grant ID MCB-1149925, National Science Foundation)
SubmissionRegistration date: 15-Sep-2016
Georgia Institute of Technology
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4230
WGS master26
SRA Experiments26
Protein Sequences92749
Publications
PubMed1
PMC1
Other datasets
BioSample26
Assembly26
Assembly details:
Assembly levelNumber of Assemblies
26
26
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001743085.1ContigMIZG00000000SAMN05590420
3223-74
GCA_001729195.1ContigMIKK00000000SAMN05590406
VC22
GCA_001729185.1ContigMIKI00000000SAMN05590403
2740-80
GCA_001729155.1ContigMIKJ00000000SAMN05590404
MZO-2
GCA_001729125.1ContigMIKH00000000SAMN05590402
857
GCA_001857545.1ContigMIPN00000000SAMN05590436
V52
GCA_001857515.1ContigMIPM00000000SAMN05590438
HE46
GCA_001857505.1ContigMIPL00000000SAMN05590437
3568-07
GCA_001857485.1ContigMIPK00000000SAMN05590426
TP
GCA_001857455.1ContigMIPJ00000000SAMN05590425
SIO
GCA_001857435.1ContigMIPI00000000SAMN05590424
C6706
GCA_001857425.1ContigMIPH00000000SAMN05590423
2633-78
GCA_001857405.1ContigMIPG00000000SAMN05590422
1074-78
GCA_001857365.1ContigMIPF00000000SAMN05590421
3225-74
GCA_001857345.1ContigMIPE00000000SAMN05590419
2523-87
GCA_001857355.1ContigMIPD00000000SAMN05590418
2497-86
GCA_001857325.1ContigMIPC00000000SAMN05590417
1496-86
GCA_001857305.1ContigMIPB00000000SAMN05590416
2479-86
GCA_001857285.1ContigMIPA00000000SAMN05590415
692-79
GCA_001857265.1ContigMIOZ00000000SAMN05590414
3272-78
GCA_001857245.1ContigMIOY00000000SAMN05590413
2512-86
GCA_001857225.1ContigMIOX00000000SAMN05590411
2631-78
GCA_001857165.1ContigMIOT00000000SAMN05590407
VC48
GCA_001857175.1ContigMIOV00000000SAMN05590409
VC56
GCA_001857155.1ContigMIOU00000000SAMN05590408
VC53
GCA_001857145.1ContigMIOW00000000SAMN05590410
2559-78
SRA Data Details
ParameterValue
Data volume, Gbases51
Data volume, Mbytes20939

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